From ef44b40e10bfc125e4a763955f7f07f9dd0b0d61 Mon Sep 17 00:00:00 2001 From: Tavi Nathanson Date: Fri, 4 Sep 2015 16:23:15 -0400 Subject: [PATCH] Add missing spaces And a few other nitpicks --- cycledash/api/genotypes.py | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/cycledash/api/genotypes.py b/cycledash/api/genotypes.py index 1c954c1..9629e04 100644 --- a/cycledash/api/genotypes.py +++ b/cycledash/api/genotypes.py @@ -386,17 +386,17 @@ def _header_spec(vcf_header_text, extant_cols): # Add Cycledash-derived columns _add_extant_column_to_spec(extant_cols, 'annotations:gene_name', res, - ('Name of the gene that overlaps with this variant\'s effect' - 'derived from Varcode project.')) + ('Name of the gene that overlaps with this variant\'s effect, ' + 'derived from Varcode.')) _add_extant_column_to_spec(extant_cols, 'annotations:transcript', res, - ('Transcript that overlaps with this variant' - 'derived from Varcode project.')) + ('Transcript that overlaps with this variant, ' + 'derived from Varcode.')) _add_extant_column_to_spec(extant_cols, 'annotations:effect_notation', res, ('Protein change caused by this variant, ' - 'derived from Varcode project.')) + 'derived from Varcode.')) _add_extant_column_to_spec(extant_cols, 'annotations:effect_type', res, - ('Type of the variant, ' - 'derived from Varcode project.')) + ('Type of this variant, ' + 'derived from Varcode.')) # Remove empty supercolumns for key, val in res.iteritems():