diff --git a/.travis.yml b/.travis.yml index a040c85..261b80f 100644 --- a/.travis.yml +++ b/.travis.yml @@ -5,9 +5,9 @@ jdk: - oraclejdk8 scala: - - 2.11.8 + - 2.11.12 -script: sbt ++$TRAVIS_SCALA_VERSION clean test +script: sbt ++$TRAVIS_SCALA_VERSION clean coverageTest cache: directories: @@ -15,7 +15,7 @@ cache: - $HOME/.sbt/boot/ - $HOME/.zinc -after_success: sbt ++$TRAVIS_SCALA_VERSION travis-report +after_success: sbt ++$TRAVIS_SCALA_VERSION travisReport before_cache: # Tricks to avoid unnecessary cache updates diff --git a/build.sbt b/build.sbt index fcf8800..c055593 100644 --- a/build.sbt +++ b/build.sbt @@ -1,4 +1,4 @@ -organization := "org.hammerlab.genomics" +group("org.hammerlab.genomics") name := "loci" github.repo("genomic-loci") @@ -7,13 +7,13 @@ addSparkDeps dep( args4j, - args4s % "1.3.0", + args4s % "1.3.1", htsjdk, iterators % "2.0.0", paths % "1.4.0", - reference % "1.4.1" + testtest, + reference % "1.4.2" + testtest, scalautils, - spark_util % "2.0.1", + spark_util % "2.0.2", string_utils % "1.2.0" ) diff --git a/project/build.properties b/project/build.properties index 394cb75..8b697bb 100644 --- a/project/build.properties +++ b/project/build.properties @@ -1 +1 @@ -sbt.version=1.0.4 +sbt.version=1.1.0 diff --git a/project/plugins.sbt b/project/plugins.sbt index 9dc0442..0003a9d 100644 --- a/project/plugins.sbt +++ b/project/plugins.sbt @@ -1 +1 @@ -addSbtPlugin("org.hammerlab.sbt" % "base" % "4.1.0") +addSbtPlugin("org.hammerlab.sbt" % "base" % "4.2.0") diff --git a/src/main/scala/org/hammerlab/genomics/loci/set/Serializer.scala b/src/main/scala/org/hammerlab/genomics/loci/set/Serializer.scala deleted file mode 100644 index c79056c..0000000 --- a/src/main/scala/org/hammerlab/genomics/loci/set/Serializer.scala +++ /dev/null @@ -1,5 +0,0 @@ -package org.hammerlab.genomics.loci.set - -import com.esotericsoftware.kryo.io.{ Input, Output } -import com.esotericsoftware.kryo.{ Kryo, Serializer ⇒ KryoSerializer } -