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BigBed-parsing improvements #427

Merged
merged 5 commits into from
Jul 11, 2016
Merged

BigBed-parsing improvements #427

merged 5 commits into from
Jul 11, 2016

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ryan-williams
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@ryan-williams ryan-williams commented Jul 8, 2016

  • handle non-compressed BigBed files
  • allow versions < 4
  • explain mysterious "+ 2 offset" comment
  • a few other nits

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Coverage increased (+0.003%) to 91.667% when pulling e57cb1a on ryan-williams:bb into 16cd0c4 on hammerlab:master.

var inflatedBuffer = pako.inflateRaw(new Uint8Array(blockBuffer));

blockBuffer =
// NOTE: "+ 2" skips over two bytes of gzip header (0x8b1f), which pako.inflateRaw will not handle.
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clarification much appreciated ;)

@armish
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armish commented Jul 8, 2016

@ryan-williams: LGTM. Have a minor comment that might or might not apply to your case.

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@ryan-williams
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all addressed, thx @armish

@armish
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armish commented Jul 11, 2016

thanks @ryan-williams! Will merge on green 👍

@armish armish merged commit 55dc221 into hammerlab:master Jul 11, 2016
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3 participants