spark-bam
Process BAM files using Apache Spark and HTSJDK; extends/improves hadoop-bam.
Full docs: http://hammerlab.org/spark-bam/
To build them locally:
cd docs
jekyll serve -H 0.0.0.0Join GitHub today
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Load genomic BAM files using Apache Spark
http://www.hammerlab.org/spark-bam/
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benchmarks/src/main/scala/org/hammerlab/bam/benchmarks | ||
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bgzf/src | ||
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check/src | ||
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cli/src | ||
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docs | ||
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load/src | ||
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project | ||
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seqdoop/src | ||
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test-bams/src/main | ||
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.gitignore | ||
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.travis.yml | ||
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LICENSE | ||
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README.md | ||
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build.sbt | ||