Aggregation of various hammerlab-org genomic, spark, and scala libraries
Scala
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Hadoop-BAM
adam-core @ ca3cf2c
args4s @ 6330cd2
cli @ 893fa1e
coverage-depth @ 462ee9a
dataproc @ 4e10e7e
guacamole @ ff45e96
io @ 7a47445
iterator @ ba86698
loci @ 4c7564e
magic-rdds @ f469f85
math @ 0e34622
path-utils @ 5f31954
project
reads @ c2ce422
readsets @ 5413bf8
reference @ 438403e
sbt-parent @ 13bcf40
shapeless @ 50aa760
spark-bam
spark-tests @ 876ad77
spark-util @ 955ef43
string-utils @ c455244
suffix-arrays @ 9ada96d
test-utils @ d027e7e
utils @ 5c797d6
utils-cli @ 6d9323f
.gitignore
.gitmodules
README.md
build.sbt
style.md

README.md

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Parallel Genomic Analysis Toolkit

Two applications:

Dependency-graph of the modules in this repo