hansenlab / minfi

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preprocessIllumina function problem about bg.correct

#198 opened Jan 3, 2020 by xuexingwangzhedishitian

Error in read.metharray(basenames = commonFiles, extended = extended, : [read.metharray] Trying to parse different IDAT files, of different size and type.

#195 opened Dec 6, 2019 by boseb

Error FlowSortedBloodEPIC on a cluster

#191 opened Sep 30, 2019 by EPICuser1

Loss of probes during preprocessIllumina

#188 opened Jul 3, 2019 by LambertDorssers

CordBlood

#187 opened Jul 1, 2019 by demis001

.cpgCollapse’ for signature ‘"data.frame"

#184 opened Apr 9, 2019 by yeswzc

makeGenomicRatioSetFromMatrix function for EPIC data?

#183 opened Apr 3, 2019 by priyatamapandey

getProbeType return different length of probe types

#182 opened Mar 22, 2019 by ShannonSzeto

Error in preprocessQuantile and preprocessFunnorm

#180 opened Feb 5, 2019 by michaelnoe

Normalization: Error in kmeans

#179 opened Feb 1, 2019 by royfrancis

getBeta() long vectors not supported yet

#178 opened Jan 21, 2019 by stewart999

makeGenomicRatioSetFromMatrix function error?

#177 opened Jan 18, 2019 by alfonsosaera

getGenomicRatioSetFromGEO failed!

#176 opened Jan 7, 2019 by cystone

estimateCellCounts bug with 1 unique pData variable

#175 opened Nov 19, 2018 by snlent

readGEORawFile() should return a RGChannelSet object

#172 opened Aug 8, 2018 by jordimartorell

mapToGenome drops probes "ilm10b4" annotation

#171 opened Aug 1, 2018 by pfransquet

getBeta from genomicmethylset

#170 opened Jul 31, 2018 by yalejiang

Add support for DelayedArray to blockFinder()

#168 opened Jul 5, 2018 by PeteHaitch

estimateCellType w/CordBlood

#167 opened Jun 27, 2018 by kasperdanielhansen

error in minfi dmpFinder

#166 opened Jun 13, 2018 by JieqiongDai

Add option to realize following `convertArray()` and `combineArray()`

#154 opened Apr 18, 2018 by PeteHaitch

Switch from colMeans() to colMeans2() in preprocessNoob incurs numerical differences

#153 opened Apr 18, 2018 by PeteHaitch

Reduce example and test runtimes Critical

#152 opened Apr 18, 2018 by PeteHaitch

Run vignette with DelayedArray-backed minfi objects

#151 opened Apr 18, 2018 by PeteHaitch

densityBeanPlot() feels slower when using DelayedArray-backed RGSet

#150 opened Apr 18, 2018 by PeteHaitch

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