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Error PEMA ASV inference: Directory swarm does not exists #59
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Hi @savvas-paragkamian and thanks for sharing. I am a bit confused though, have you tried using If yes, do you also get an error then ? |
Yes I write In the initialize script also it is written:
Maybe that's why the folder wasn't created? Currently, I run the analysis from the dereplication step checkpoint. I have manually created both folders (777 permissions) i.e. In addition I changed the parameters file to My question is, if I change the parameters file and continue the analysis from the checkpoint, PEMA reads the new changes of the parameters? |
Let's break this down to steps! 😉 If you have already tried so, did you have an error ?
in the beginning of each checkpoint, pema reads the parameters file thanks to the |
The new job with 4 samples and with the correct The job from the checkpoint failed with the following error:
|
Thanks for sharing @savvas-paragkamian . I ll fix that as part of pema |
Error with the PEMA ASV inference. Possibly due to spelling error.
The line that possibly was skipped because of spelling error in the parameters file.
In the parameters file I write
clusteringAlgo algo_swarm
, while it is suggested to write(write "Swarm" or "vsearch" or "CROP" after algo_).
In the initialize.bds script there is a line that creates the folder
Swarm
.The error
The parameters file:
parameters0f.isd_crete_2016_20230823.txt
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