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@harmslab

Harms Lab @ University of Oregon

Software projects created by members of the the Harms lab at the University of Oregon

Pinned

  1. pytc Public

    python program for analyzing isothermal titration calorimetry data

    Python 19 7

  2. A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

    Python 20 9

  3. Python package for building fitness landscapes from protein lattice models

    Python 2 4

  4. pdbtools Public

    A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

    Python 104 55

  5. gpmap Public

    A Python API for managing genotype-phenotype map data

    Python 8 8

  6. 2d protein lattice model simulator in Python

    Python 1 6

Repositories

  • gpmap Public

    A Python API for managing genotype-phenotype map data

    Python 8 8 0 2 Updated Jan 13, 2022
  • flowsym Public

    A Python API for simulating flow cytometry data.

    Python 0 MIT 2 0 1 Updated Nov 15, 2021
  • gpvolve Public

    A Python API for computing evolutionary paths across genotype-phenotype maps and clustering of genotype-phenotype maps.

    Python 2 MIT 5 6 1 Updated Nov 15, 2021
  • topiary Public

    library for managing phylogenetics projects using pandas dataframes

    Python 0 MIT 1 0 0 Updated Sep 8, 2021
  • asr-protocol Public

    Protocol and scripts for doing ancestral sequence reconstruction

    Python 0 MIT 1 0 0 Updated Aug 26, 2021
  • gpgraph Public

    NetworkX for genotype-phenotype maps

    Python 1 Unlicense 4 0 1 Updated Aug 26, 2021
  • likelihood Public

    Library for fitting models using a likelihood framework.

    Python 3 MIT 1 0 0 Updated Aug 25, 2021
  • epistasis Public

    A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

    Python 20 Unlicense 9 3 0 Updated Aug 24, 2021
  • website Public

    Website for the lab

    HTML 0 MIT 2 0 0 Updated Apr 19, 2021
  • gmx-template Public

    template for setting up MD simulations in the Harms lab.

    Python 0 MIT 1 0 0 Updated Apr 16, 2021

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