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@harmslab

Harms Lab @ University of Oregon

Software projects created by members of the the Harms lab at the University of Oregon

Pinned

  1. pytc pytc Public

    python program for analyzing isothermal titration calorimetry data

    Python 25 7

  2. epistasis epistasis Public

    A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

    Python 32 11

  3. latticegpm latticegpm Public

    Python package for building fitness landscapes from protein lattice models

    Python 2 4

  4. pdbtools pdbtools Public

    A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

    Python 161 64

  5. gpmap gpmap Public

    A Python API for managing genotype-phenotype map data

    Python 11 8

  6. latticeproteins latticeproteins Public

    2d protein lattice model simulator in Python

    Python 1 7

Repositories

Showing 10 of 57 repositories
  • ElliptiCBn Public

    tool for measuring ellipticity of cucurbituril macrocycles

    HTML 0 MIT 1 0 0 Updated Apr 11, 2024
  • eee Public

    ensemble epistasis engine

    Python 0 MIT 2 0 0 Updated Nov 16, 2023
  • gpseer Public

    A tool to predict missing data in sparsely sampled genotype-phenotype maps

    Python 5 3 1 0 Updated Aug 18, 2023
  • gpmap Public

    A Python API for managing genotype-phenotype map data

    Python 11 8 1 3 Updated Aug 18, 2023
  • epistasis Public

    A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

    Python 32 Unlicense 11 7 0 Updated Aug 18, 2023
  • topiary Public

    Python framework for doing ancestral sequence reconstruction

    Python 27 MIT 6 6 0 Updated Apr 4, 2023
  • website Public

    Website for the lab

    HTML 0 MIT 2 0 0 Updated Jan 16, 2023
  • topiary-examples Public

    Jupyter notebooks demonstrating the topiary ancestral sequence reconstruction package

    Jupyter Notebook 2 MIT 3 0 0 Updated Jan 3, 2023
  • flowsym Public

    A Python API for simulating flow cytometry data.

    Python 1 MIT 2 0 2 Updated Dec 26, 2022
  • gpvolve Public

    A Python API for computing evolutionary paths across genotype-phenotype maps and clustering of genotype-phenotype maps.

    Python 3 MIT 6 6 2 Updated Dec 26, 2022

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