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Mark mentioned that Stefan provided an example project that shows this. I am filing this to track the issue.
In my case, I have experienced something similar in my multi-module project but the symptoms were slightly different. One thing to note is that in my project, the hang only happens when "test" is invoked. If I invoke /test everything works fine.
IMPORTANT This project has moved to https://github.com/sbt/sbt. This issue still exists to avoid dead links, but GitHub limitations prevent the original issue from being correctly preserved here. Please see sbt/sbt#512 for the full issue and to comment.