• Various utility tools for working with genomics data

    Java 12 4 MIT Updated Feb 20, 2019
  • Jupyter Notebook 1 Updated Feb 19, 2019
  • Pipeline of tools to process raw fastq data and produce meaningful genomic data

    Perl 7 5 MIT Updated Feb 18, 2019
  • Next generation pipeline used to process FASTQ and produce meaningful genomic data. Currently experimental and not intended for production use.

    Java 1 MIT Updated Feb 15, 2019
  • Front end application for use with Schuberg Philis connect portal that enables downloading of genomic data from S3 compatible storage

    JavaScript 1 Updated Nov 26, 2018
  • Quality Check scripts [OBSOLETE]

    Shell Updated Sep 12, 2018
  • Data portal for exploring and accessing data

    JavaScript 3 GPL-3.0 Updated Mar 20, 2018
  • Second generation of the ICGC DCC release ETL built on Spark

    Java 10 GPL-3.0 Updated Mar 5, 2018
  • Reference data importers

    Java 2 GPL-3.0 Updated Mar 2, 2018
  • ID system for ICGC projects

    Java 4 GPL-3.0 Updated Feb 28, 2018
  • Repo for the HMF health checker [OBSOLETE]

    Java 1 1 MIT Updated Jan 24, 2017
  • Tool for importing CPCT patients into cBioPortal

    Python MPL-2.0 Updated Oct 20, 2016
  • RNASeq pipeline

    Perl 9 Updated Sep 8, 2016
  • Small datasets for testing purpose (FASTQ, BAM)

    Updated Mar 7, 2016

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