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brain_image_processing

Video processing pipeline for Dulac lab

Project is all about converting existing workstation-based GUI code to cluster-based batch processing code that runs under SLURM on Odyssey, our cluster at HU FAS RC.

Parts/Steps of the workflow

  1. Downsample the image with an ImageJ macro using a fast Fourier transform with high-pass and low-pass parameters

Approach

  1. Convert the GUI-based macro to a Fiji headless macro. Really, I'd like to move this over to MATLAB, but I'd like to keep the processing parts as similar as possible for now. (Mantra: optimize later...)

  2. ...

10/30/14, rmf

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Video processing pipeline for Dulac lab

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