[2024/11/19 21:42:16 - INFO - 846 - font_manager] Fontsize 0.00 < 1.0 pt not allowed by FreeType. Setting fontsize = 1 pt #889
Description
- The following data is a sample
refGene refChr refId referenceStart referenceEnd queryGene queryChr queryId queryStart queryEnd strand score
gene:SORBI_3003G287000 3 3020 62010135 62012133 Zm00001eb371370 chr8 3536 182260657 182262367 - 0.661
gene:SORBI_3003G287800 3 3029 62094959 62096389 Zm00001eb371350 chr8 3533 182219478 182220911 - 0.893
gene:SORBI_3003G287900 3 3030 62099655 62103888 Zm00001eb371320 chr8 3530 182151419 182159149 - 0.94
gene:SORBI_3003G288000 3 3031 62118107 62119498 Zm00001eb371300 chr8 3528 182117987 182119393 - 0.901
gene:SORBI_3003G288100 3 3032 62120088 62121518 Zm00001eb371290 chr8 3527 182065115 182066539 - 0.912
gene:SORBI_3003G288200 3 3033 62127765 62129189 Zm00001eb371280 chr8 3526 182032841 182033977 - 0.814
gene:SORBI_3003G288401 3 3035 62152782 62153375 Zm00001eb371270 chr8 3525 181978560 181980392 - 0.864
gene:SORBI_3003G288600 3 3037 62163619 62164881 Zm00001eb371250 chr8 3523 181919147 181920626 - 0.915
gene:SORBI_3003G289800 3 3049 62232186 62235863 Zm00001eb371240 chr8 3522 181876537 181880449 - 0.91
gene:SORBI_3003G290500 3 3057 62307662 62308336 Zm00001eb371220 chr8 3520 181808491 181809063 - 0.962
gene:SORBI_3003G291300 3 3066 62397076 62402048 Zm00001eb371210 chr8 3519 181769675 181771324 - 0.91
gene:SORBI_3003G291500 3 3068 62409217 62412143 Zm00001eb371200 chr8 3518 181725340 181728701 - 0.994
gene:SORBI_3003G291600 3 3069 62418196 62421468 Zm00001eb371190 chr8 3517 181688425 181690746 - 0.726
gene:SORBI_3003G291900 3 3072 62444082 62446248 Zm00001eb371180 chr8 3516 181685410 181686554 - 0.796
gene:SORBI_3003G292000 3 3073 62460452 62462330 Zm00001eb371170 chr8 3515 181677088 181678240 - 0.623
gene:SORBI_3003G292200 3 3075 62476940 62481628 Zm00001eb371150 chr8 3513 181580898 181585566 - 0.919
gene:SORBI_3003G292400 3 3077 62488987 62492917 Zm00001eb371140 chr8 3512 181573906 181577909 - 0.961
gene:SORBI_3003G292700 3 3080 62522638 62530165 Zm00001eb371130 chr8 3511 181469926 181473671 - 0.856
gene:SORBI_3003G292932 3 3083 62537633 62538423 Zm00001eb371100 chr8 3509 181401004 181421537 - 0.783
gene:SORBI_3003G293000 3 3084 62540057 62546627 Zm00001eb371090 chr8 3508 181289682 181296536 - 0.909
gene:SORBI_3003G293100 3 3085 62554415 62556154 Zm00001eb371070 chr8 3506 181273639 181274872 - 0.696
gene:SORBI_3003G293200 3 3086 62560278 62570993 Zm00001eb371050 chr8 3504 181111826 181124011 - 0.862
gene:SORBI_3003G294500 3 3102 62686222 62690548 Zm00001eb371030 chr8 3502 181039351 181044206 - 0.914
gene:SORBI_3003G294600 3 3104 62693520 62701891 Zm00001eb371020 chr8 3501 180999802 181010361 - 0.837
gene:SORBI_3003G295400 3 3113 62768184 62773265 Zm00001eb371010 chr8 3500 180936889 180996719 - 0.946
gene:SORBI_3003G295900 3 3118 62795928 62797815 Zm00001eb371000 chr8 3499 180925407 180927246 - 0.905
gene:SORBI_3003G296000 3 3119 62800844 62804791 Zm00001eb370990 chr8 3498 180918623 180922868 - 0.926
gene:SORBI_3003G296200 3 3122 62826424 62831104 Zm00001eb370980 chr8 3497 180898888 180903607 - 0.913
gene:SORBI_3003G296300 3 3124 62835261 62836480 Zm00001eb370960 chr8 3495 180874105 180875157 - 0.731
gene:SORBI_3003G296400 3 3125 62851838 62857040 Zm00001eb370940 chr8 3493 180821975 180822968 - 0.982
gene:SORBI_3003G296700 3 3128 62873558 62876899 Zm00001eb370920 chr8 3491 180817234 180819425 - 0.9
gene:SORBI_3003G297100 3 3132 62913890 62914225 Zm00001eb370900 chr8 3489 180790936 180791334 - 0.821
gene:SORBI_3003G297200 3 3133 62918704 62921344 Zm00001eb370890 chr8 3488 180785031 180787264 - 0.919
gene:SORBI_3003G297500 3 3136 62934835 62936350 Zm00001eb370880 chr8 3487 180781196 180783209 - 0.794
gene:SORBI_3003G297900 3 3140 62962706 62968377 Zm00001eb370860 chr8 3485 180770140 180775741 - 0.976
gene:SORBI_3003G298100 3 3142 62971327 62975445 Zm00001eb370850 chr8 3484 180764355 180767083 - 0.792
gene:SORBI_3003G298300 3 3144 62981971 62983893 Zm00001eb370830 chr8 3482 180742615 180745652 - 0.919
gene:SORBI_3003G298600 3 3147 62993604 62998675 Zm00001eb370810 chr8 3480 180708428 180713760 - 0.918
gene:SORBI_3003G299000 3 3151 63023449 63027474 Zm00001eb370790 chr8 3479 180644885 180649457 - 0.882
gene:SORBI_3003G299700 3 3157 63077896 63081215 Zm00001eb370770 chr8 3477 180468218 180468922 - 0.717
gene:SORBI_3003G299800 3 3158 63094269 63095018 Zm00001eb370730 chr8 3473 180427156 180427869 - 0.722
gene:SORBI_3003G300100 3 3161 63114719 63117327 Zm00001eb370720 chr8 3472 180418556 180421509 - 0.749
gene:SORBI_3003G300400 3 3165 63144152 63147842 Zm00001eb370700 chr8 3470 180374398 180377488 - 0.952
gene:SORBI_3003G300600 3 3167 63161662 63164118 Zm00001eb370690 chr8 3469 180364120 180366629 - 0.908
gene:SORBI_3003G300800 3 3169 63181762 63183256 Zm00001eb370660 chr8 3466 180340923 180342511 - 0.905
gene:SORBI_3003G301000 3 3171 63196204 63199238 Zm00001eb370650 chr8 3465 180327096 180330023 - 0.833
gene:SORBI_3003G301200 3 3174 63204829 63206232 Zm00001eb370640 chr8 3463 180304706 180306066 - 0.633
gene:SORBI_3003G301300 3 3175 63213290 63215005 Zm00001eb370620 chr8 3462 180297496 180299596 - 0.855
gene:SORBI_3003G301500 3 3177 63222256 63225945 Zm00001eb370610 chr8 3461 180286297 180290438 - 0.899
gene:SORBI_3003G301700 3 3179 63243595 63244377 Zm00001eb370600 chr8 3460 180205822 180206493 - 0.761
gene:SORBI_3003G301800 3 3180 63253091 63259732 Zm00001eb370590 chr8 3459 180189110 180201407 - 0.98
gene:SORBI_3003G301900 3 3181 63264681 63271511 Zm00001eb370580 chr8 3458 180121619 180135090 - 0.96
gene:SORBI_3003G302000 3 3183 63284245 63284871 Zm00001eb370570 chr8 3457 180089716 180090363 - 0.805
gene:SORBI_3003G302200 3 3185 63307616 63311627 Zm00001eb370560 chr8 3456 180074956 180087814 - 0.958
gene:SORBI_3003G302600 3 3190 63328741 63330204 Zm00001eb370550 chr8 3455 180044500 180046101 - 0.863
gene:SORBI_3003G302800 3 3192 63339984 63341543 Zm00001eb370540 chr8 3454 180032927 180034480 - 0.841
gene:SORBI_3003G302900 3 3193 63355500 63361635 Zm00001eb370530 chr8 3453 179991026 179996212 - 0.862
gene:SORBI_3003G303000 3 3194 63364873 63368782 Zm00001eb370520 chr8 3452 179984464 179987423 - 0.918
gene:SORBI_3003G303200 3 3196 63374869 63377084 Zm00001eb370500 chr8 3450 179961959 179962940 - 0.769
gene:SORBI_3003G303600 3 3200 63399624 63402253 Zm00001eb370490 chr8 3449 179957329 179960211 - 0.873
gene:SORBI_3003G303700 3 3201 63403938 63405080 Zm00001eb370480 chr8 3448 179955244 179956577 - 0.807
gene:SORBI_3003G303800 3 3202 63405892 63412274 Zm00001eb370470 chr8 3447 179937451 179954842 - 0.906
gene:SORBI_3003G304200 3 3206 63459312 63463023 Zm00001eb370460 chr8 3446 179899728 179903441 - 0.943
gene:SORBI_3003G304300 3 3207 63464691 63465689 Zm00001eb370450 chr8 3445 179896383 179897234 - 0.827
gene:SORBI_3003G304400 3 3208 63468006 63474425 Zm00001eb370440 chr8 3444 179889247 179895206 - 0.933
gene:SORBI_3003G304500 3 3209 63482786 63483157 Zm00001eb370430 chr8 3443 179870683 179871027 - 0.807
gene:SORBI_3003G304800 3 3212 63489880 63496005 Zm00001eb370410 chr8 3441 179777389 179784450 - 0.777
gene:SORBI_3003G305100 3 3215 63516016 63516429 Zm00001eb370380 chr8 3439 179753095 179753508 - 0.949
gene:SORBI_3003G305200 3 3216 63517157 63522216 Zm00001eb370370 chr8 3438 179702504 179707749 - 0.964
gene:SORBI_3003G305400 3 3219 63527175 63528995 Zm00001eb370350 chr8 3437 179701050 179701652 - 0.858
gene:SORBI_3003G305500 3 3220 63529660 63531049 Zm00001eb370340 chr8 3436 179698214 179699541 - 0.906
gene:SORBI_3003G305700 3 3222 63538082 63540327 Zm00001eb370330 chr8 3435 179665775 179667946 - 0.953
gene:SORBI_3003G306100 3 3226 63556734 63560710 Zm00001eb370320 chr8 3434 179651190 179663225 - 0.786
gene:SORBI_3003G306200 3 3227 63563871 63567165 Zm00001eb370310 chr8 3433 179627311 179631084 - 0.894
gene:SORBI_3003G306300 3 3228 63568494 63572298 Zm00001eb370300 chr8 3432 179621360 179625757 - 0.956
gene:SORBI_3003G306700 3 3232 63599065 63602511 Zm00001eb370290 chr8 3431 179616553 179619646 - 0.96
gene:SORBI_3003G306800 3 3233 63604663 63606114 Zm00001eb370280 chr8 3430 179614254 179615705 - 0.894
gene:SORBI_3003G306900 3 3234 63607916 63612976 Zm00001eb370270 chr8 3429 179605241 179612605 - 0.921
gene:SORBI_3003G307200 3 3237 63629827 63632913 Zm00001eb370260 chr8 3428 179589411 179592397 - 0.769
gene:SORBI_3003G307700 3 3242 63653099 63654144 Zm00001eb370210 chr8 3423 179538269 179539331 - 0.822
gene:SORBI_3003G308400 3 3249 63697464 63700070 Zm00001eb370180 chr8 3421 179499560 179502185 - 0.957
gene:SORBI_3003G308500 3 3250 63703372 63713206 Zm00001eb370170 chr8 3420 179426622 179456163 - 0.911
gene:SORBI_3003G308700 3 3251 63730598 63733793 Zm00001eb370160 chr8 3419 179365119 179368262 - 0.925
gene:SORBI_3003G308800 3 3252 63742701 63745587 Zm00001eb370150 chr8 3418 179332785 179336042 - 0.909
gene:SORBI_3003G309300 3 3256 63774259 63777761 Zm00001eb370140 chr8 3417 179313496 179316967 - 0.954
gene:SORBI_3003G309400 3 3257 63788812 63794598 Zm00001eb370130 chr8 3416 179266919 179273055 - 0.956
gene:SORBI_3003G311800 3 3282 63993504 63994935 Zm00001eb370070 chr8 3411 179057281 179058656 - 0.867
gene:SORBI_3003G312700 3 3292 64103363 64122199 Zm00001eb370020 chr8 3407 178968001 178988030 - 0.943
gene:SORBI_3003G313100 3 3296 64127488 64129127 Zm00001eb370010 chr8 3406 178960402 178962129 - 0.709
gene:SORBI_3003G313900 3 3304 64223010 64226182 Zm00001eb369990 chr8 3404 178915376 178916676 - 0.746
gene:SORBI_3003G314100 3 3306 64231947 64236746 Zm00001eb369980 chr8 3403 178908840 178914617 - 0.94
gene:SORBI_3003G314200 3 3307 64240064 64243164 Zm00001eb369970 chr8 3402 178805681 178808524 - 0.752
gene:SORBI_3003G314500 3 3310 64257416 64259135 Zm00001eb369960 chr8 3401 178802471 178804642 - 0.959
gene:SORBI_3003G314700 3 3314 64266129 64271888 Zm00001eb369950 chr8 3400 178793372 178799695 - 0.922
gene:SORBI_3003G314800 3 3315 64283151 64287236 Zm00001eb369940 chr8 3399 178777212 178781358 - 0.956
gene:SORBI_3003G316300 3 3328 64401918 64413427 Zm00001eb369900 chr8 3396 178671905 178674405 - 0.961
gene:SORBI_3003G316400 3 3330 64417867 64419909 Zm00001eb369890 chr8 3394 178664572 178666611 - 0.943
gene:SORBI_3003G316500 3 3331 64421875 64433010 Zm00001eb369880 chr8 3393 178653599 178663476 - 0.843
gene:SORBI_3003G316700 3 3333 64452118 64460388 Zm00001eb369860 chr8 3392 178554267 178563185 - 0.911
gene:SORBI_3003G317100 3 3336 64479418 64483003 Zm00001eb369850 chr8 3391 178547467 178550333 - 0.843
gene:SORBI_3003G317200 3 3337 64498034 64498675 Zm00001eb369840 chr8 3390 178545409 178546050 - 0.972
gene:SORBI_3003G317600 3 3341 64522920 64529132 Zm00001eb369830 chr8 3389 178516003 178529306 - 0.957
gene:SORBI_3003G317700 3 3342 64529774 64533838 Zm00001eb369820 chr8 3388 178498824 178502204 - 0.92
gene:SORBI_3003G318200 3 3347 64573407 64573937 Zm00001eb369810 chr8 3387 178482664 178483148 - 0.628
gene:SORBI_3003G318300 3 3348 64601541 64603550 Zm00001eb369800 chr8 3386 178432981 178434987 - 0.899
gene:SORBI_3003G318900 3 3356 64646740 64649205 Zm00001eb369790 chr8 3385 178427601 178430120 - 0.853
gene:SORBI_3003G319000 3 3357 64652443 64655915 Zm00001eb369780 chr8 3384 178421488 178424707 - 0.924
gene:SORBI_3003G319600 3 3364 64709842 64717645 Zm00001eb369770 chr8 3383 178411930 178417424 - 0.91
gene:SORBI_3003G319700 3 3365 64746205 64749560 Zm00001eb369750 chr8 3381 178386268 178389577 - 0.961
gene:SORBI_3003G320200 3 3371 64801955 64803314 Zm00001eb369740 chr8 3380 178349221 178350582 - 0.777
gene:SORBI_3003G320300 3 3372 64808433 64810619 Zm00001eb369730 chr8 3379 178339881 178345423 - 0.814
gene:SORBI_3003G320900 3 3378 64850586 64854984 Zm00001eb369720 chr8 3378 178326010 178334997 - 0.727
gene:SORBI_3003G321000 3 3379 64857553 64862878 Zm00001eb369710 chr8 3377 178319670 178321329 - 0.776
gene:SORBI_3003G321400 3 3383 64892361 64893859 Zm00001eb369700 chr8 3376 178317117 178317885 - 0.881
gene:SORBI_3003G321700 3 3386 64906296 64907816 Zm00001eb369690 chr8 3375 178312018 178313664 - 0.968
gene:SORBI_3003G322000 3 3389 64922883 64924463 Zm00001eb369680 chr8 3374 178309205 178310793 - 0.823
gene:SORBI_3003G322300 3 3392 64937501 64940164 Zm00001eb369670 chr8 3373 178298279 178302746 - 0.898
gene:SORBI_3003G322400 3 3393 64940683 64942068 Zm00001eb369660 chr8 3372 178296126 178297791 - 0.944
gene:SORBI_3003G322700 3 3397 64954301 64963802 Zm00001eb369650 chr8 3371 178289609 178294781 - 0.918
gene:SORBI_3003G322800 3 3398 64966252 64967373 Zm00001eb369640 chr8 3370 178285048 178286356 - 0.873
gene:SORBI_3003G323201 3 3402 64984087 64984434 Zm00001eb369620 chr8 3369 178279371 178279742 - 0.744
gene:SORBI_3003G323300 3 3403 64993684 64996961 Zm00001eb369610 chr8 3368 178266525 178270301 - 0.831
gene:SORBI_3003G323500 3 3405 65000902 65003555 Zm00001eb369590 chr8 3367 178210813 178213084 - 0.92
gene:SORBI_3003G324000 3 3411 65055225 65056886 Zm00001eb369580 chr8 3366 178205562 178206998 - 0.936
gene:SORBI_3003G324200 3 3413 65064464 65067991 Zm00001eb369570 chr8 3365 178179527 178181116 - 0.81
gene:SORBI_3003G324400 3 3415 65109907 65110635 Zm00001eb369560 chr8 3364 178147966 178148691 - 0.671
gene:SORBI_3003G324500 3 3416 65120997 65121530 Zm00001eb369550 chr8 3363 178138558 178139055 - 0.708
gene:SORBI_3003G324900 3 3420 65145183 65145833 Zm00001eb369530 chr8 3361 178118009 178118755 - 0.7
gene:SORBI_3003G325400 3 3425 65165607 65168061 Zm00001eb369520 chr8 3360 178108428 178110072 - 0.716
gene:SORBI_3003G325700 3 3428 65198170 65199153 Zm00001eb369490 chr8 3357 178096598 178097578 - 0.893
gene:SORBI_3003G325800 3 3429 65200039 65204334 Zm00001eb369480 chr8 3356 178090412 178094646 - 0.76
gene:SORBI_3003G326000 3 3431 65212371 65218505 Zm00001eb369470 chr8 3355 178077499 178082473 - 0.883
gene:SORBI_3003G326100 3 3432 65220514 65224471 Zm00001eb369460 chr8 3354 178070319 178074340 - 0.865
gene:SORBI_3003G326200 3 3433 65225332 65225794 Zm00001eb369450 chr8 3353 178067588 178068042 - 0.704
gene:SORBI_3003G326300 3 3434 65232815 65233248 Zm00001eb369440 chr8 3352 178063838 178064292 - 0.807
gene:SORBI_3003G326600 3 3437 65249800 65252149 Zm00001eb369420 chr8 3350 178041800 178044429 - 0.799
gene:SORBI_3003G326700 3 3438 65257508 65259729 Zm00001eb369410 chr8 3349 178036476 178040762 - 0.897
gene:SORBI_3003G326800 3 3439 65261047 65263886 Zm00001eb369390 chr8 3347 178031175 178034044 - 0.972
gene:SORBI_3003G326900 3 3440 65265945 65268466 Zm00001eb369380 chr8 3346 178023593 178028725 - 0.869
gene:SORBI_3003G327600 3 3447 65317989 65319074 Zm00001eb369360 chr8 3344 177937185 177938267 - 0.967
gene:SORBI_3003G327700 3 3448 65332438 65333637 Zm00001eb369350 chr8 3343 177910946 177912170 - 0.87
gene:SORBI_3003G328500 3 3457 65390005 65392362 Zm00001eb369340 chr8 3342 177904105 177906882 - 0.898
gene:SORBI_3003G328600 3 3458 65393945 65399092 Zm00001eb369330 chr8 3341 177888828 177901312 - 0.914
gene:SORBI_3003G328700 3 3459 65406284 65408590 Zm00001eb369320 chr8 3340 177836899 177839417 - 0.948
gene:SORBI_3003G328800 3 3460 65411731 65413835 Zm00001eb369310 chr8 3339 177832722 177834716 - 0.989
gene:SORBI_3003G329100 3 3463 65430243 65431109 Zm00001eb369300 chr8 3338 177830946 177831875 - 0.818
gene:SORBI_3003G329500 3 3467 65465769 65470924 Zm00001eb369280 chr8 3337 177769433 177775821 - 0.942
gene:SORBI_3003G329600 3 3468 65484568 65486762 Zm00001eb369270 chr8 3336 177747584 177749826 - 0.923
gene:SORBI_3003G329700 3 3469 65497688 65502223 Zm00001eb369260 chr8 3335 177733533 177738245 - 0.771
gene:SORBI_3003G329800 3 3470 65504460 65508149 Zm00001eb369250 chr8 3334 177727911 177732249 - 0.984
gene:SORBI_3003G330000 3 3472 65516858 65519333 Zm00001eb369240 chr8 3333 177721377 177724201 - 0.97
gene:SORBI_3003G330500 3 3478 65547800 65557156 Zm00001eb369210 chr8 3331 177691319 177694558 - 0.867
gene:SORBI_3003G331100 3 3483 65599435 65602034 Zm00001eb369190 chr8 3329 177676342 177678672 - 0.808
gene:SORBI_3003G332000 3 3494 65654876 65655907 Zm00001eb369170 chr8 3327 177642459 177643490 - 0.872
gene:SORBI_3003G332200 3 3496 65660857 65664624 Zm00001eb369160 chr8 3326 177630150 177630722 - 0.879
gene:SORBI_3003G332401 3 3498 65682270 65685780 Zm00001eb369150 chr8 3325 177574478 177580111 - 0.983
gene:SORBI_3003G332500 3 3499 65688251 65692207 Zm00001eb369140 chr8 3324 177566557 177571342 - 0.944
gene:SORBI_3003G333000 3 3503 65719144 65720874 Zm00001eb369130 chr8 3323 177514040 177514968 - 0.738
gene:SORBI_3003G333100 3 3504 65723626 65727425 Zm00001eb369120 chr8 3322 177510043 177513765 - 0.932
gene:SORBI_3003G333400 3 3508 65734575 65736101 Zm00001eb369110 chr8 3321 177460119 177461670 - 0.763
gene:SORBI_3003G333900 3 3513 65757792 65758463 Zm00001eb369090 chr8 3319 177450058 177450699 - 0.861
gene:SORBI_3003G334100 3 3515 65769217 65772529 Zm00001eb369080 chr8 3318 177374555 177378021 - 0.774
gene:SORBI_3003G334300 3 3517 65777444 65778997 Zm00001eb369070 chr8 3317 177361519 177363078 - 0.851
gene:SORBI_3003G334600 3 3520 65791292 65792535 Zm00001eb369060 chr8 3316 177359284 177360471 - 0.759
gene:SORBI_3003G334700 3 3521 65800661 65816926 Zm00001eb369050 chr8 3315 177323457 177350406 - 0.96
gene:SORBI_3003G335200 3 3525 65856877 65858774 Zm00001eb369040 chr8 3314 177315888 177317761 - 0.905
gene:SORBI_3003G335300 3 3526 65865413 65867924 Zm00001eb369030 chr8 3313 177301354 177304261 - 0.982
gene:SORBI_3003G335700 3 3530 65904854 65907796 Zm00001eb369010 chr8 3312 177276716 177279657 - 0.919
gene:SORBI_3003G335900 3 3532 65916009 65916638 Zm00001eb369000 chr8 3311 177271304 177271924 - 0.73
gene:SORBI_3003G336000 3 3533 65925603 65929726 Zm00001eb368990 chr8 3310 177259690 177263707 - 0.955
gene:SORBI_3003G336500 3 3538 65973388 65977291 Zm00001eb368980 chr8 3309 177224799 177230177 - 0.919
gene:SORBI_3003G336600 3 3540 65980915 65983632 Zm00001eb368970 chr8 3308 177186979 177189592 - 0.752
gene:SORBI_3003G336800 3 3542 66006484 66010481 Zm00001eb368960 chr8 3307 177154311 177158448 - 0.84
gene:SORBI_3003G336900 3 3543 66017501 66020146 Zm00001eb368950 chr8 3306 177142966 177145782 - 0.937
gene:SORBI_3003G337000 3 3544 66024015 66027144 Zm00001eb368940 chr8 3305 177127058 177130794 - 1
gene:SORBI_3003G337100 3 3545 66030870 66032353 Zm00001eb368930 chr8 3304 177123626 177125114 - 0.785
gene:SORBI_3003G337300 3 3547 66036329 66046191 Zm00001eb368920 chr8 3303 177101340 177121669 - 0.95
gene:SORBI_3003G337400 3 3548 66049750 66051718 Zm00001eb368900 chr8 3301 176949666 176951462 - 0.954
gene:SORBI_3003G337700 3 3551 66081053 66083714 Zm00001eb368860 chr8 3298 176849129 176851944 - 0.407
gene:SORBI_3003G337900 3 3553 66104925 66106014 Zm00001eb368850 chr8 3297 176832392 176833450 - 0.839
gene:SORBI_3003G338000 3 3554 66107394 66111507 Zm00001eb368840 chr8 3296 176827618 176831365 - 0.847
gene:SORBI_3003G338100 3 3555 66113770 66118398 Zm00001eb368820 chr8 3295 176813529 176825284 - 0.868
gene:SORBI_3003G338500 3 3560 66150659 66154964 Zm00001eb368810 chr8 3294 176780257 176786643 - 0.954
gene:SORBI_3003G338900 3 3564 66197647 66200842 Zm00001eb368790 chr8 3293 176769646 176772899 - 0.779
gene:SORBI_3003G339100 3 3567 66213882 66215513 Zm00001eb368780 chr8 3292 176764357 176765442 - 0.797
gene:SORBI_3003G339500 3 3571 66236321 66238429 Zm00001eb368740 chr8 3289 176712211 176714304 - 0.891
gene:SORBI_3003G340300 3 3579 66325341 66327267 Zm00001eb368700 chr8 3286 176649190 176650980 - 0.879
gene:SORBI_3003G340500 3 3582 66346593 66350069 Zm00001eb368690 chr8 3285 176619786 176625546 - 0.845
gene:SORBI_3003G340800 3 3585 66369097 66375366 Zm00001eb368680 chr8 3284 176612987 176617580 - 0.849
gene:SORBI_3003G341100 3 3588 66393127 66395353 Zm00001eb368640 chr8 3281 176583572 176586081 - 0.807
gene:SORBI_3003G341200 3 3589 66398843 66399376 Zm00001eb368620 chr8 3279 176550445 176550969 - 0.734
gene:SORBI_3003G341400 3 3591 66414292 66417995 Zm00001eb368590 chr8 3277 176534805 176535545 - 0.55
gene:SORBI_3003G341500 3 3592 66421711 66423939 Zm00001eb368580 chr8 3276 176523709 176525899 - 0.931
gene:SORBI_3003G341900 3 3596 66434301 66435744 Zm00001eb368570 chr8 3275 176521475 176523191 - 0.87
gene:SORBI_3003G342000 3 3597 66440296 66443480 Zm00001eb368560 chr8 3274 176433412 176439332 - 0.762
gene:SORBI_3003G342500 3 3601 66468077 66476576 Zm00001eb368550 chr8 3273 176417112 176419629 - 0.906
gene:SORBI_3003G342600 3 3602 66485455 66486102 Zm00001eb368530 chr8 3272 176349433 176350059 - 0.949
gene:SORBI_3003G342800 3 3604 66501733 66503330 Zm00001eb368510 chr8 3270 176338852 176340522 - 0.904
gene:SORBI_3003G342900 3 3605 66509621 66510418 Zm00001eb368490 chr8 3269 176333220 176333996 - 0.853
gene:SORBI_3003G343200 3 3608 66519269 66523373 Zm00001eb368460 chr8 3265 176301075 176321896 - 0.923
gene:SORBI_3003G343300 3 3609 66524089 66526620 Zm00001eb368450 chr8 3264 176297790 176300322 - 0.935
gene:SORBI_3003G343500 3 3611 66532641 66536197 Zm00001eb368430 chr8 3263 176225686 176229444 - 0.952
- package info
Python 3.13.0 | packaged by conda-forge | (main, Oct 8 2024, 20:04:32) [GCC 13.3.0] on linux
plotnine 0.14.1 pyhd8ed1ab_0 conda-forge
matplotlib 3.9.2 py313h78bf25f_2 conda-forge
matplotlib-base 3.9.2 py313h129903b_2 conda-forge
pandas 2.2.3 py313ha87cce1_1 conda-forge
- first step
import pandas as pd
import matplotlib.pyplot as plt
from matplotlib.colors import to_rgba
from plotnine import *
import plotnine
- second step, copy data to clipboard
coll_df = pd.read_clipboard()
- third step
dict1 = {"x": "queryId", "y": "refId"}
dict2 = {"color": "strand"}
custom_colors = {"+": "red", "-": "blue"}
my_theme = theme(
panel_background=element_rect(fill='white'),
panel_border=element_rect(fill=None, color="black", linewidth=2, linetype="solid"),
panel_spacing=0,
axis_title=element_text(size=90),
legend_text=element_text(size=40, ha='left', va='center'),
legend_title=element_text(size=40, ha='center', va='center'),
legend_ticks=element_line(size=4),
strip_text=element_text(size=50),
# strip_background=element_blank()
strip_background = element_rect(fill=to_rgba('#C0C0C0', 0.4), color=to_rgba('#696969', 1))
)
plot = (ggplot(coll_df, aes(**dict1)) +
facet_grid('refChr~queryChr', scales="free", space="free") +
geom_point(aes(**dict2), size=2, alpha=1) +
plotnine.scale_color_manual(values=custom_colors) +
scale_x_continuous(expand=(0, 0)) +
scale_y_continuous(expand=(0, 0)))
plot1 = plot + theme_grey(base_size=50) + my_theme + labs(x='x_label', y='y_label')
plot1 = plot1 + guides(**{'color': guide_legend(override_aes={'size': 12, 'alpha': 1})})
plot1.save("test_plotnine.png", width=1500, height=2000, units="mm", limitsize=False)
- (step 2-4 )output information
/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py:615: PlotnineWarning: Saving 1500.0 x 2000.0 mm image.
/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py:616: PlotnineWarning: Filename: test_plotnine.png
Traceback (most recent call last):
File "<python-input-2>", line 27, in <module>
plot1.save("test_plotnine.png", width=1500, height=2000, units="mm", limitsize=False)
~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py", line 673, in save
sv = self.save_helper(
filename=filename,
...<8 lines>...
**kwargs,
)
File "/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py", line 621, in save_helper
figure = self.draw(show=False)
File "/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py", line 282, in draw
self.guides._setup(self)
~~~~~~~~~~~~~~~~~~^^^^^^
File "/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/guides/guides.py", line 173, in _setup
self._lookup[(scale, ae)] = g
~~~~~~~~~~~~^^^^^^^^^^^^^
TypeError: unhashable type: 'scale_color_manual'
- if use plotnine 0.14.0 or 0.13.6, the same code(step 2-4) works fine
/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py:606: PlotnineWarning: Saving 1500.0 x 2000.0 mm image.
/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py:607: PlotnineWarning: Filename: test_plotnine.png
- When I use plotnine 0.13.6 and use the following code, I encountered a size of 0 information and was a little confused
import pandas as pd
import matplotlib.pyplot as plt
from matplotlib.colors import to_rgba
from plotnine import *
import plotnine
import logging
logger = logging.getLogger('main')
logger.setLevel(level=logging.INFO)
logging.basicConfig(level=logging.INFO,
# filename='output.log',
datefmt='%Y/%m/%d %H:%M:%S',
format='[%(asctime)s - %(levelname)s - %(lineno)d - %(module)s] %(message)s')
use above 5. second step code
use above 6. third step code
- output result has a log info, this info may be generated from plotnine_link and matplotlib_link
/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py:606: PlotnineWarning: Saving 1500.0 x 2000.0 mm image.
/home/dell/miniconda3/envs/test_plotnine/lib/python3.13/site-packages/plotnine/ggplot.py:607: PlotnineWarning: Filename: test_plotnine.png
[2024/11/19 21:42:16 - INFO - 846 - font_manager] Fontsize 0.00 < 1.0 pt not allowed by FreeType. Setting fontsize = 1 pt
a. These are my two questions.
b. Any suggestions to make the code more stable and the code wokrs fine for 0.13.6, 0.14.0 and 0.14.1?
c. Which plotnine version is relative more stable?
d. Does fontsize = 1 mean one seventy-second of an inch?
Thank you very much!