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In-progress projects at Harvard School of Public Health Bioinformaitcs Core
Python Perl R Clojure Shell Groovy Other
branch: master
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ab_450K_repeats/scripts add 450K scripts, update lk_FOY, add aw_NFKB scripts
ab_nucmito/scripts unknown updates
ab_rrbs_comparison/scripts
ab_teloprobes/scripts final telomeric probe version
aw_NFKB/scripts wagers mogene script with interaction terms in limma
aw_NMF_proteomics 1st commit
aw_rnaseq_dev add 450K scripts, update lk_FOY, add aw_NFKB scripts
ay_linkertrim Pick useful verification targets based on multiple criteria
ben_trap_pilot Project cleanup for completed projects.
bh_assembly/scripts general cleanup
dg_cardiac_timeseries/scripts trial version of deseq analysis to find genes which vary over time
dr_mouseexome Updated scripts for re-running analyses and CRAM compressing finished…
ds_HIF1_secreted_factors/scripts First commit after reorg
ds_PTGIR_promoter/scripts NMF analysis added
ds_pathprint_lab_cells/scripts First commit after reorg
dt_leukemias/scripts Tenen analysis
ea_ibd Post process cufflinks transcript output, providing summary details o…
hoche_chipseq Project cleanup for completed projects.
hochedlinger_rnaseq Mass update of legacy information from previous projects.
hoechedlinger_chipseq Mass update of legacy information from previous projects.
jg_potoroo Cleaup.
jl_hiv Updated scripts for re-running analyses and CRAM compressing finished…
jl_mirna_kmer Added .gitignore.
js_transposon Update download to latest release
jz_giab Improvements on error reporting and parallelization for illumina vari…
kantor_asthma_rnaseq Initialize asthma project.
kc_rrbs/scripts First commit after reorg
kclarke_colon_biopsies/scripts final version of kclarke analysis
kobzik_influenza Updating some older projects.
kraft_wgs Added scripts used to annotate the genomes.
lg_AOF2_knockout_analysis/scripts First commit after reorg
lg_bone_development/scripts First commit after reorg
lieberman_mirna Updating some older projects.
ljg_cardiac_rnaseq/scripts slurm command subbed,environment vars global
lk_450k/scripts final biopolymer comparisons, first kobzik metadata downloads
lk_FOY final telomeric probe version
lk_rrbs/scripts/RRBS_methylkit First commit after reorg
lr_motor_neurons/scripts/FACS_sorted_MNs_from_MNs-AKIs
lu_rnaseq Merged with master.
lz_HSC_niche_effects/scripts final changes to script
mg_spikeins/scripts merging update
pgen_23andme Improve readme with background and add explicit license
pk_gwaseq Added the filtering sugggestions script.
rk_thesis Merged with master.
rrbs_workflows/scripts First commit after reorg
rs_knockout_array_analysis/scripts Update process.r
rs_open_vs_closed_chromatin_analysis/scripts First commit after reorg
scde_deploy Generalize to have BII only deployment target; reuse cloudbiolinux fu…
seidman_rnaseq/scripts final biopolymer comparisons, first kobzik metadata downloads
slim_rnaseq Mass update of legacy information from previous projects.
snp-assess Provide java main class to enable easier access to snp-assess functio…
sw_cardiomyocyte_differentiation First commit after reorg
tanzi_ad Filtering of variants as input to downstream statistical analyses
tp_shrna Support non-replicate differential expression analysis; generalize su…
vs_ripchip/scripts merging update
vv_miRNA-Seq vishal functional analyses
wen_hiv Example for capture-recapture calculation added.
widenmaier_rnaseq/scripts Added missing ggplot2 import.
wp_rna_seq/scripts First commit after reorg
zon_rnaseq Mass update of legacy information from previous projects.
.gitignore Added .Rhistory.
README.md Initial repository for HBC projects

README.md

Various in-progress projects at Harvard School of Public Health Bioinformatics core

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