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In-progress projects at Harvard School of Public Health Bioinformaitcs Core

branch: master
Octocat-spinner-32 ab_450K_repeats add 450K scripts, update lk_FOY, add aw_NFKB scripts January 23, 2014
Octocat-spinner-32 aw_NFKB wagers mogene script with interaction terms in limma January 30, 2014
Octocat-spinner-32 aw_NMF_proteomics add 450K scripts, update lk_FOY, add aw_NFKB scripts January 23, 2014
Octocat-spinner-32 aw_rnaseq_dev add 450K scripts, update lk_FOY, add aw_NFKB scripts January 23, 2014
Octocat-spinner-32 ay_linkertrim Pick useful verification targets based on multiple criteria January 25, 2012
Octocat-spinner-32 ben_trap_pilot Project cleanup for completed projects. June 01, 2013
Octocat-spinner-32 dr_mouseexome Add configuration file for mouse exome variant calling pilot September 16, 2013
Octocat-spinner-32 ds_HIF1_secreted_factors First commit after reorg June 11, 2013
Octocat-spinner-32 ds_PTGIR_promoter NMF analysis added August 09, 2013
Octocat-spinner-32 ds_pathprint_lab_cells First commit after reorg June 11, 2013
Octocat-spinner-32 dt_leukemias Tenen analysis December 17, 2013
Octocat-spinner-32 ea_ibd Post process cufflinks transcript output, providing summary details o… September 19, 2011
Octocat-spinner-32 hoche_chipseq Project cleanup for completed projects. June 01, 2013
Octocat-spinner-32 hochedlinger_rnaseq Mass update of legacy information from previous projects. June 03, 2013
Octocat-spinner-32 hoechedlinger_chipseq Mass update of legacy information from previous projects. June 03, 2013
Octocat-spinner-32 jg_potoroo Cleaup. September 28, 2012
Octocat-spinner-32 jl_hiv Provide automatic download of snp-assess code for processing November 25, 2013
Octocat-spinner-32 jl_mirna_kmer Added .gitignore. November 20, 2013
Octocat-spinner-32 js_transposon Update download to latest release March 21, 2013
Octocat-spinner-32 jz_giab Improvements on error reporting and parallelization for illumina vari… July 03, 2013
Octocat-spinner-32 kantor_asthma_rnaseq Initialize asthma project. November 26, 2013
Octocat-spinner-32 kc_rrbs First commit after reorg June 11, 2013
Octocat-spinner-32 kclarke_colon_biopsies final version of kclarke analysis June 25, 2013
Octocat-spinner-32 kobzik_influenza Updating some older projects. August 24, 2013
Octocat-spinner-32 kraft_wgs Added scripts used to annotate the genomes. June 03, 2013
Octocat-spinner-32 lg_AOF2_knockout_analysis First commit after reorg June 11, 2013
Octocat-spinner-32 lg_bone_development First commit after reorg June 11, 2013
Octocat-spinner-32 lieberman_mirna Updating some older projects. August 24, 2013
Octocat-spinner-32 lk_450k QC and initial analysis April 16, 2014
Octocat-spinner-32 lk_FOY updates to sepsis scripts April 16, 2014
Octocat-spinner-32 lk_rrbs First commit after reorg June 11, 2013
Octocat-spinner-32 lr_motor_neurons First commit after reorg June 11, 2013
Octocat-spinner-32 lu_rnaseq Merged with master. July 11, 2013
Octocat-spinner-32 lz_HSC_niche_effects final changes to script April 16, 2014
Octocat-spinner-32 pgen_23andme Improve readme with background and add explicit license December 11, 2013
Octocat-spinner-32 pk_gwaseq Added the filtering sugggestions script. July 06, 2012
Octocat-spinner-32 rk_thesis Merged with master. July 11, 2013
Octocat-spinner-32 rrbs_workflows First commit after reorg June 11, 2013
Octocat-spinner-32 rs_knockout_array_analysis Update process.r January 22, 2014
Octocat-spinner-32 rs_open_vs_closed_chromatin_analysis First commit after reorg June 11, 2013
Octocat-spinner-32 scde_deploy Generalize to have BII only deployment target; reuse cloudbiolinux fu… September 06, 2011
Octocat-spinner-32 slim_rnaseq Mass update of legacy information from previous projects. June 03, 2013
Octocat-spinner-32 snp-assess Provide java main class to enable easier access to snp-assess functio… November 25, 2013
Octocat-spinner-32 sw_cardiomyocyte_differentiation First commit after reorg June 11, 2013
Octocat-spinner-32 tanzi_ad Merge branch 'master' of github.com:hbc/projects April 15, 2014
Octocat-spinner-32 tp_shrna Support non-replicate differential expression analysis; generalize su… November 28, 2011
Octocat-spinner-32 vv_miRNA-Seq Delete eraseme.rmd January 17, 2014
Octocat-spinner-32 wen_hiv Example for capture-recapture calculation added. November 19, 2013
Octocat-spinner-32 widenmaier_rnaseq Added missing ggplot2 import. February 10, 2014
Octocat-spinner-32 wp_rna_seq First commit after reorg June 11, 2013
Octocat-spinner-32 zon_rnaseq Mass update of legacy information from previous projects. June 03, 2013
Octocat-spinner-32 .gitignore Added .Rhistory. March 13, 2013
Octocat-spinner-32 README.md Initial repository for HBC projects March 03, 2011
README.md

Various in-progress projects at Harvard School of Public Health Bioinformatics core

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