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initial configuration

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1 parent d1558f9 commit 3cc6d8e734178e2c2b373b2845f6a3d867aaa306 @helios committed Aug 2, 2011
Showing with 6 additions and 37 deletions.
  1. +6 −2 Rakefile
  2. +0 −10 lib/bio-core.rb
  3. +0 −18 test/helper.rb
  4. +0 −7 test/test_bio-core.rb
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8 Rakefile
@@ -17,11 +17,15 @@ Jeweler::Tasks.new do |gem|
gem.name = "bio-core"
gem.homepage = "http://github.com/helios/bioruby-core"
gem.license = "MIT"
- gem.summary = %Q{TODO: one-line summary of your gem}
- gem.description = %Q{TODO: longer description of your gem}
+ gem.summary = %Q{BioRuby core plugins, most and stable plugins. BlastXMLParser, BWA, SamTools }
+ gem.description = %Q{Bioruby core plugins}
gem.email = "ilpuccio.febo@gmail.com"
gem.authors = ["Raoul J.P. Bonnal"]
# dependencies defined in Gemfile
+ gem.add_runtime_dependency 'bio'
+ gem.add_runtime_dependency 'bio-bwa'
+ gem.add_runtime_dependency 'bio-samtools'
+ gem.add_runtime_dependency 'bio-blastxmlparser'
end
Jeweler::RubygemsDotOrgTasks.new
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10 lib/bio-core.rb
@@ -1,10 +0,0 @@
-# Please require your code below, respecting the bioruby directory tree.
-# For instance, perhaps the only uncommented line in this file might
-# be something like this:
-#
-# require 'bio/sequence/awesome_sequence_plugin_thingy'
-#
-# and then create the ruby file 'lib/bio/sequence/awesome_sequence_thingy.rb'
-# and put your plugin's code there. It is bad practice to write other code
-# directly into this file, because doing so causes confusion if this biogem
-# was ever to get merged into the main bioruby tree.
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18 test/helper.rb
@@ -1,18 +0,0 @@
-require 'rubygems'
-require 'bundler'
-begin
- Bundler.setup(:default, :development)
-rescue Bundler::BundlerError => e
- $stderr.puts e.message
- $stderr.puts "Run `bundle install` to install missing gems"
- exit e.status_code
-end
-require 'test/unit'
-require 'shoulda'
-
-$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
-$LOAD_PATH.unshift(File.dirname(__FILE__))
-require 'bio-core'
-
-class Test::Unit::TestCase
-end
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7 test/test_bio-core.rb
@@ -1,7 +0,0 @@
-require 'helper'
-
-class TestBioCore < Test::Unit::TestCase
- should "probably rename this file and start testing for real" do
- flunk "hey buddy, you should probably rename this file and start testing for real"
- end
-end

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