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GEM
  remote: http://rubygems.org/
  specs:
    activemodel (3.2.3)
      activesupport (= 3.2.3)
      builder (~> 3.0.0)
    activerecord (3.2.3)
      activemodel (= 3.2.3)
      activesupport (= 3.2.3)
      arel (~> 3.0.2)
      tzinfo (~> 0.3.29)
    activerecord-jdbc-adapter (1.2.2)
    activerecord-jdbcsqlite3-adapter (1.2.2)
      activerecord-jdbc-adapter (~> 1.2.2)
      jdbc-sqlite3 (~> 3.7.2)
    activesupport (3.2.3)
      i18n (~> 0.6)
      multi_json (~> 1.0)
    arel (3.0.2)
    bio (1.4.2)
    bio-blastxmlparser (1.0.1)
      bio-logger (>= 1.0.0)
      nokogiri (>= 1.5.0)
    bio-logger (1.0.1)
      log4r (>= 1.1.9)
    bio-samtools (0.5.3)
      bio (>= 1.4.2)
      ffi
    builder (3.0.0)
    daemons (1.1.8)
    diff-lcs (1.1.3)
    ffi (1.0.11)
    ffi (1.0.11-java)
    git (1.2.5)
    i18n (0.6.0)
    jdbc-sqlite3 (3.7.2)
    jeweler (1.8.3)
      bundler (~> 1.0)
      git (>= 1.2.5)
      rake
      rdoc
    json (1.7.3)
    json (1.7.3-java)
    log4r (1.1.10)
    multi_json (1.3.6)
    nokogiri (1.5.2)
    nokogiri (1.5.2-java)
    parallel (0.5.16)
    progressbar (0.11.0)
    rake (0.9.2.2)
    rcov (0.9.11)
    rcov (0.9.11-java)
    rdoc (3.12)
      json (~> 1.4)
    rspec (2.10.0)
      rspec-core (~> 2.10.0)
      rspec-expectations (~> 2.10.0)
      rspec-mocks (~> 2.10.0)
    rspec-core (2.10.1)
    rspec-expectations (2.10.0)
      diff-lcs (~> 1.1.3)
    rspec-mocks (2.10.1)
    ruby-ensembl-api (1.0.1)
      activerecord
      bio (>= 1)
    rubyvis (0.5.1)
    shoulda (3.0.1)
      shoulda-context (~> 1.0.0)
      shoulda-matchers (~> 1.0.0)
    shoulda-context (1.0.0)
    shoulda-matchers (1.0.0)
    sqlite3 (1.3.6)
    thor (0.14.6)
    tzinfo (0.3.33)

PLATFORMS
  java
  ruby

DEPENDENCIES
  activerecord (>= 3.0.5)
  activerecord-jdbcsqlite3-adapter
  bio (>= 1.4.2)
  bio-blastxmlparser
  bio-samtools (>= 0.3.2)
  bundler (~> 1.1.0)
  daemons (>= 1.1.0)
  ffi (>= 1.0.6)
  jdbc-sqlite3
  jeweler (~> 1.8.3)
  json
  parallel
  progressbar (>= 0.9.0)
  rake (= 0.9.2.2)
  rcov (~> 0.9.11)
  rspec (>= 2.5.0)
  ruby-ensembl-api (>= 1.0.1)
  rubyvis (>= 0.5.0)
  shoulda
  sqlite3
  thor (= 0.14.6)
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