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Jun 26, 2013

  1. Raoul J.P. Bonnal

    initial step on bio2rdf guideline

    authored June 26, 2013
  2. Raoul J.P. Bonnal

    temptative fix for an unfinished part of the code

    authored June 26, 2013

Jun 25, 2013

  1. Raoul J.P. Bonnal

    use specific identifier for external gene reference

    authored June 25, 2013
  2. Raoul J.P. Bonnal

    update fs metadata

    authored June 25, 2013

May 28, 2013

  1. Raoul J.P. Bonnal

    install third party software only on request, run biongs quietly warn…

    …ings on request, upgrade version
    authored May 28, 2013

May 17, 2013

  1. Raoul J.P. Bonnal

    remove unseless files

    authored May 17, 2013
  2. Raoul J.P. Bonnal

    untrack locked Gemfile

    authored May 17, 2013
  3. Raoul J.P. Bonnal

    add support for query files/samples/project on fs

    authored May 17, 2013

May 16, 2013

  1. Raoul J.P. Bonnal

    check is the transcript index is numeric or not

    authored May 16, 2013
  2. Raoul J.P. Bonnal

    print complete uri

    authored May 16, 2013
  3. Raoul J.P. Bonnal

    Version bump to 0.6.1

    authored May 16, 2013
  4. Raoul J.P. Bonnal

    remove rcov and unbound rake to a specifc version

    authored May 16, 2013
  5. Raoul J.P. Bonnal

    remove support to rcov

    authored May 16, 2013

Mar 18, 2013

  1. Raoul J.P. Bonnal

    transcript iterator now reads all transcripts

    authored March 18, 2013
  2. Raoul J.P. Bonnal

    attributes may be empty, transcript length is still bugged, TO FIX

    authored March 18, 2013

Mar 12, 2013

  1. Raoul J.P. Bonnal

    compute transcript length summing its exons lenght

    authored March 12, 2013

Nov 21, 2012

  1. Raoul J.P. Bonnal

    bump up minor version

    authored November 21, 2012
  2. Raoul J.P. Bonnal

    unfinished tests for FS modules

    authored November 21, 2012
  3. Raoul J.P. Bonnal

    dump scanned result to fil for quick response

    authored November 21, 2012

Nov 08, 2012

  1. Raoul J.P. Bonnal

    fix searches for symlinks and categories

    authored November 08, 2012

Oct 26, 2012

  1. Raoul J.P. Bonnal

    Merge branch 'cufflinks2' into patch_fs

    Conflicts:
    	lib/bio/ngs/fs.rb
    May be it is still unstable
    authored October 26, 2012
  2. Raoul J.P. Bonnal

    try fixing fs smart path

    authored October 26, 2012

Oct 25, 2012

  1. Raoul J.P. Bonnal

    pass how many processes can be started using Paralle.

    authored October 25, 2012
  2. Raoul J.P. Bonnal

    supports parallelization for smart quantification

    authored October 25, 2012
  3. Raoul J.P. Bonnal

    fix wrong name for passing samples

    authored October 25, 2012
  4. Raoul J.P. Bonnal

    removes params from printing

    authored October 25, 2012
  5. Raoul J.P. Bonnal

    new method for smart quantification

    uses the new automatic file system identification/classification of
    filetypes to discover files in the project directory
    authored October 25, 2012
  6. Raoul J.P. Bonnal

    refactoring file system file type identification

    authored October 25, 2012

Oct 18, 2012

  1. Raoul J.P. Bonnal

    using root is possible to run a differential expression from a differ…

    …et location than the current folder
    authored October 18, 2012
  2. Raoul J.P. Bonnal

    regenerates gemspec updating version and removing some unsed file

    authored October 18, 2012
  3. Raoul J.P. Bonnal

    Removes duplicated code

    authored October 18, 2012

Oct 17, 2012

  1. Raoul J.P. Bonnal

    init refactor of smart fs search

    authored October 17, 2012
  2. Raoul J.P. Bonnal

    testing a better implementation for smart fs

    authored October 17, 2012

Oct 16, 2012

  1. Raoul J.P. Bonnal

    fix de2 and de2quartile thor task creation

    authored October 16, 2012
  2. Raoul J.P. Bonnal

    select which version to pick up from the binary path, fix cufflinks2 …

    …binary name
    authored October 16, 2012
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