New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Tophat: fastq.gz and generic paired names #37

helios opened this Issue Jun 14, 2012 · 0 comments


None yet
1 participant

helios commented Jun 14, 2012

Task in biongs which make the mapping using tophat, has the parameter fastq.
The procedure can not handle smoothly if the user has fastq.gz file but must importantly generic names for paired end file.
The convention is to have filename called _forward and _reverse but generally speaking from Illumina forward is named R1 and reverse R2. So an update is required.

@ghost ghost assigned helios Jun 14, 2012

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment