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Exit status #9

Merged
merged 2 commits into from
Aug 4, 2022
Merged

Exit status #9

merged 2 commits into from
Aug 4, 2022

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hepcat72
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@hepcat72 hepcat72 commented Aug 3, 2022

Added a new version of IO::Pipe::Producer in order to accurately capture exit codes.

The previous version checked exit status, but that exit status was always 0 because it was the Producer fork parent ending without it returning the exit status of its child process, and that child process wasn't even attempting to get the exit status anyway. It may be that I had assumed it was getting the exit status of the command being executed.

…le close".

Files checked in: htseq2multx.pl tests/run_tests.sh tests/simulate_multx_error_test_27.pl
…it code of fastq-multx.

Files checked in: Makefile.PL htseq2multx.pl tests/run_tests.sh tests/simulate_multx_error_test_27.pl tests/simulate_multx_non0_test_28.pl tests/test_data/test_27_error.out tests/test_data/test_27_summary.out tests/test_data/test_28_error.out tests/test_data/test_28_summary.out
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hepcat72 commented Aug 3, 2022

I created an issue for "All checks have failed": #8

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Looks fine to me! Just had a question, because I would not have know how to simulate this kind of error, specifically.

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hepcat72 commented Aug 4, 2022

@lparsons - Do you wish to have a look at this PR before I merge it and install on the cluster for HTSEQ to use?

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This looks like a good improvement. Some rather minor comments inline, but go ahead and merge.

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3 participants