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(ns radical (:use [incanter.core :only (abs sq sqrt)]
[incanter.stats :only (mean)]
[clojure.contrib.combinatorics :only (combinations)]))
;hello lem
(def set-m (memoize set))
(def sort-m (memoize sort))
(def flatten-m (memoize flatten))
(def frequencies-m (memoize frequencies))
(def count-m (memoize count))
(def to-words (memoize (fn [file-tree]
(if (coll? file-tree)
(apply concat (map to-words (set-m (sort-m (flatten-m file-tree)))))
(re-seq #"[a-z]+" (org.apache.commons.lang.StringUtils/lowerCase (slurp (str file-tree))))))))
(def word-list (memoize (comp set-m to-words)))
(def freq-files (memoize (fn [pof word]
(/ (or (get (frequencies-m (to-words pof)) word) 0)
(count-m (to-words pof))))))
(def freq (memoize (fn [pof word]
(if (instance? java.io.File pof)
(freq-files pof word)
(mean (vector (freq (first pof) word) ; combine frequencies by taking their unweighted mean.
(freq (second pof) word)))))))
(def euclidean (memoize (fn [pof1 pof2 pofs]
(sqrt (reduce + (map (fn [word]
(sq (- (freq pof1 word)
(freq pof2 word))))
(word-list pofs)))))))
(def best-pairing (memoize (fn [pofs]
(first (sort (fn [[pof-1-1 pof-1-2] [pof-2-1 pof-2-2]]
(compare (euclidean pof-1-1 pof-1-2 pofs)
(euclidean pof-2-1 pof-2-2 pofs)))
(combinations pofs 2))))))
; makes an agglomerative hierarchical cluster of the pofs.
;pof = pairing or file (i.e. a file tree). pofs is a list of them.
(defn cluster [pofs]
(if (= (count pofs) 1)
(first pofs)
(cluster (conj (filter (complement #(some (set [%]) (best-pairing pofs)))
pofs)
(best-pairing pofs)))))
(defn interesting-words [pof top-pof]
(sort #(> (abs (second %)) (abs (second %2)))
(map (fn [word]
[word (- (freq pof word) (freq-files top-pof word))])
(word-list top-pof))))
(def *directory-string* "/Users/herdrick/Dropbox/clojure/hierarchical-classifier/data/store/five-file-stash/")
(def *txt-files* (seq (org.apache.commons.io.FileUtils/listFiles (new java.io.File *directory-string*) nil false)))
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