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@biojava @amplab @nrnb @bigdatagenomics @BD2KGenomics @piccolo2d

Pinned repositories

  1. bigdatagenomics/adam

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 639 234

  2. bigdatagenomics/utils

    General (non-omics) code used across BDG products. Apache 2 licensed.

    Scala 19 23

  3. bigdatagenomics/bdg-formats

    Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 26 32

  4. HadoopGenomics/Hadoop-BAM

    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

    Java 49 39

  5. lick

    LiCK, Library for ChucK

    ChucK 93 9

  6. ga4gh/ga4gh-schemas

    Work on data models and APIs for Genomic data.

    Protocol Buffer 211 113

888 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

July 2017

Created a pull request in bigdatagenomics/cannoli that received 16 comments

Update adam dependency version to 0.23.0-SNAPSHOT.

Jenkins build will fail due to bigdatagenomics/adam#1578

+31 −10 • 16 comments
Created an issue in bigdatagenomics/adam that received 4 comments

Scala copy method not supported in abstract classes such as AlignmentRecordRDD

See issue bigdatagenomics/cannoli#55

4 comments

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