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@biojava @amplab @nrnb @bigdatagenomics @BD2KGenomics @piccolo2d

Pinned repositories

  1. bigdatagenomics/adam

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    522 Scala

  2. bigdatagenomics/utils

    General (non-omics) code used across BDG products. Apache 2 licensed.

    17 Scala

  3. bigdatagenomics/bdg-formats

    Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    24 Shell

  4. HadoopGenomics/Hadoop-BAM

    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

    40 Java

  5. lick

    LiCK, Library for ChucK

    84 ChucK

  6. ga4gh/schemas

    Work on data models and APIs for Genomic data.

    183 Protocol Buffer

700 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

September 2016

Created 2 repositories

Created a pull request in bigdatagenomics/bdg-formats that received 19 comments

Merge VariantAnnotation and DatabaseVariantAnnotation records

Merge VariantAnnotation and DatabaseVariantAnnotation records into VariantAnnotation Align record fields more closely with VCF INFO reserved keys…

19 comments +88 −37

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