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@biojava @amplab @nrnb @bigdatagenomics @BD2KGenomics @piccolo2d

Pinned repositories

  1. bigdatagenomics/adam

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 550 200

  2. bigdatagenomics/utils

    General (non-omics) code used across BDG products. Apache 2 licensed.

    Scala 18 20

  3. bigdatagenomics/bdg-formats

    Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 24 29

  4. HadoopGenomics/Hadoop-BAM

    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

    Java 43 37

  5. lick

    LiCK, Library for ChucK

    ChucK 89 8

  6. ga4gh/schemas

    Work on data models and APIs for Genomic data.

    Protocol Buffer 192 109

727 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

December 2016

Created a pull request in bigdatagenomics/adam that received 4 comments

Code style fixes

Instead of finishing up docs on the plane last night, I ran through and made some code style fixes. Some may overlap with those in #1278.

Created an issue in bigdatagenomics/bdg-formats that received 6 comments

Reference allele value for Number=R VCF INFO attributes

The documentation for VariantAttribute fields states that Number=R VCF INFO attribute values are split for multi-allelic sites /** Total read dept…

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