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Organizations

@biojava @amplab @nrnb @bigdatagenomics @BD2KGenomics @piccolo2d

Pinned repositories

  1. bigdatagenomics/adam

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 754 270

  2. bigdatagenomics/cannoli

    Big Data Genomics ADAM Pipe API wrappers for bioinformatics tools. Apache 2 licensed.

    Scala 10 9

  3. bigdatagenomics/bdg-formats

    Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 28 36

  4. HadoopGenomics/Hadoop-BAM

    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

    Java 62 49

  5. dishevelled-bio

    dishevelled.org bio

    Java

  6. lick

    LiCK, Library for ChucK

    ChucK 106 12

684 contributions in the last year

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Contribution activity

September 2018

Created a pull request in bigdatagenomics/adam that received 5 comments

[ADAM-2039] Adding support for writing BED format per UCSC definition

Fixes #2039 @benwbooth Please let me know if this helps.

+120 −2 5 comments

Created an issue in disq-bio/disq that received 1 comment

HtsjdkVariantsRddStorage read fails in Spark shell due to serialization issues

$ mvn assembly:assembly -DdescriptorId=jar-with-dependencies $ spark-shell --jars target/disq-0.0.1-SNAPSHOT-jar-with-dependencies.jar ... scala> i…

1 comment

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