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@biojava @amplab @nrnb @bigdatagenomics @BD2KGenomics @piccolo2d

Pinned repositories

  1. bigdatagenomics/adam

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 568 206

  2. bigdatagenomics/utils

    General (non-omics) code used across BDG products. Apache 2 licensed.

    Scala 19 20

  3. bigdatagenomics/bdg-formats

    Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 24 32

  4. HadoopGenomics/Hadoop-BAM

    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

    Java 43 39

  5. lick

    LiCK, Library for ChucK

    ChucK 90 8

  6. ga4gh/schemas

    Work on data models and APIs for Genomic data.

    Protocol Buffer 195 109

770 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

January 2017

Created an issue in bigdatagenomics/adam that received 3 comments

adam-shell does not allow additional jars via Spark jars argument

If I have this right, adam-shell does not allow additional jars via Spark --jars argument $ adam-shell --jars my-jar.jar ... scala> import org.bdge…

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