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@bioconda @czi-hca-comp-tools

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  1. COMBINE-lab/salmon COMBINE-lab/salmon Public

    🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

    C++ 780 165

  2. COMBINE-lab/terminus COMBINE-lab/terminus Public

    Rust 57 3

  3. COMBINE-lab/minnow COMBINE-lab/minnow Public

    C++ 10 2

  4. COMBINE-lab/RapClust COMBINE-lab/RapClust Public

    Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes

    Python 30 6

  5. COMBINE-lab/pufferfish COMBINE-lab/pufferfish Public

    An efficient index for the colored, compacted, de Bruijn graph

    C 108 19

  6. COMBINE-lab/quark COMBINE-lab/quark Public

    semi-reference-based short read compression

    C++ 11 5