diff --git a/.travis.yml b/.travis.yml index 7020efb78..0e7cefcf4 100644 --- a/.travis.yml +++ b/.travis.yml @@ -12,6 +12,8 @@ jobs: osx_image: xcode9.4 # Python 3.7.4 running on macOS 10.14.4 language: shell # 'language: python' is an error on Travis CI macOS before_install: + - brew update-reset + - source ~/.bash_profile - brew update - brew install openslide - echo 'export PATH="/usr/local/Frameworks/Python.framework/Versions/Current/bin:$PATH"' >> /Users/travis/.bash_profile diff --git a/src/histolab/data/__init__.py b/src/histolab/data/__init__.py index a9b521413..b0f0d4fbc 100644 --- a/src/histolab/data/__init__.py +++ b/src/histolab/data/__init__.py @@ -240,7 +240,9 @@ def _load_svs(filename: str) -> Tuple[openslide.OpenSlide, str]: def aorta_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover - """Aorta tissue, brightfield, JPEG 2000, YCbCr + """aorta_tissue() -> Tuple[openslide.OpenSlide, str] + + Aorta tissue, brightfield, JPEG 2000, YCbCr This image is available here http://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/ @@ -258,7 +260,9 @@ def aorta_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover def breast_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover - """Breast tissue, TCGA-BRCA dataset. + """breast_tissue() -> Tuple[openslide.OpenSlide, str] + + Breast tissue, TCGA-BRCA dataset. This image is available here https://portal.gdc.cancer.gov/files/9c960533-2e58-4e54-97b2-8454dfb4b8c8 @@ -280,7 +284,9 @@ def breast_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover def breast_tissue_diagnostic_green_pen() -> Tuple[ openslide.OpenSlide, str ]: # pragma: no cover - """Breast tissue, TCGA-BRCA dataset. Diagnostic slide with green pen. + """breast_tissue_diagnostic_green_pen() -> Tuple[openslide.OpenSlide, str] + + Breast tissue, TCGA-BRCA dataset. Diagnostic slide with green pen. This image is available here https://portal.gdc.cancer.gov/files/da36d3aa-9b19-492a-af4f-cc028a926d96 @@ -302,7 +308,9 @@ def breast_tissue_diagnostic_green_pen() -> Tuple[ def breast_tissue_diagnostic_red_pen() -> Tuple[ openslide.OpenSlide, str ]: # pragma: no cover - """Breast tissue, TCGA-BRCA dataset. Diagnostic slide with red pen. + """breast_tissue_diagnostic_red_pen() -> Tuple[openslide.OpenSlide, str] + + Breast tissue, TCGA-BRCA dataset. Diagnostic slide with red pen. This image is available here https://portal.gdc.cancer.gov/files/f8b4cee6-9149-45b4-ae53-82b0547e1e34 @@ -324,7 +332,9 @@ def breast_tissue_diagnostic_red_pen() -> Tuple[ def breast_tissue_diagnostic_black_pen() -> Tuple[ openslide.OpenSlide, str ]: # pragma: no cover - """Breast tissue, TCGA-BRCA dataset. Diagnostic slide with black pen. + """breast_tissue_diagnostic_black_pen() -> Tuple[openslide.OpenSlide, str] + + Breast tissue, TCGA-BRCA dataset. Diagnostic slide with black pen. This image is available here https://portal.gdc.cancer.gov/files/31e248bf-ee24-4d18-bccb-47046fccb461 @@ -344,7 +354,9 @@ def breast_tissue_diagnostic_black_pen() -> Tuple[ def cmu_small_region() -> Tuple[openslide.OpenSlide, str]: - """Carnegie Mellon University MRXS sample tissue + """cmu_small_region() -> Tuple[openslide.OpenSlide, str] + + Carnegie Mellon University MRXS sample tissue This image is available here http://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/ @@ -362,7 +374,9 @@ def cmu_small_region() -> Tuple[openslide.OpenSlide, str]: def heart_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover - """Heart tissue, brightfield, JPEG 2000, YCbCr + """heart_tissue() -> Tuple[openslide.OpenSlide, str] + + Heart tissue, brightfield, JPEG 2000, YCbCr This image is available here http://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/ @@ -380,7 +394,9 @@ def heart_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover def ovarian_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover - """Ovarian tissue, TCGA-OV dataset. + """ovarian_tissue() -> Tuple[openslide.OpenSlide, str] + + Ovarian tissue, TCGA-OV dataset. This image is available here https://portal.gdc.cancer.gov/cases/b777ec99-2811-4aa4-9568-13f68e380c86 @@ -401,7 +417,9 @@ def ovarian_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover def prostate_tissue() -> Tuple[openslide.OpenSlide, str]: # pragma: no cover - """Prostate tissue, TCGA-PRAD dataset. + """prostate_tissue() -> Tuple[openslide.OpenSlide, str] + + Prostate tissue, TCGA-PRAD dataset. This image is available here https://portal.gdc.cancer.gov/files/6b725022-f1d5-4672-8c6c-de8140345210