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Analysis recipes

Luís edited this page Jul 16, 2017 · 43 revisions

This is a collection of hwglabr2 analysis recipes. It exemplifies some of the most common analyses you can perform using hwglabr2.

hwglabr2 aims at providing support for some common analyses, while not reimplementing functionality that can be found on Bioconductor. The two Bioconductor packages (besides GenomicRanges) most commonly used in these recipes are rtracklayer and EnrichedHeatmap.

rtraklayer is useful for file I/O, while EnrichedHeatmap provides functionality to collect signal over specified genomic intervals (and plot heatmaps using the output).

Pick a recipe from the list on the right hand side bar for details on the analysis.