Skip to content
TODO: one-line summary of your gem
Ruby
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
lib
test
.document
.gitignore
.travis.yml
Gemfile
LICENSE.txt
README.md
README.rdoc
Rakefile
VERSION

README.md

bio-faidx

Build Status

API to work with the fai format produced to samtools. Useful if you don't want to rely on all the samtools component. Can query sequences from the fasta file. At the minute, it uses bio-samtools, but the idea is to make this self-sufficient.

Installation

gem install bio-faidx

Usage

require 'bio-faidx'

The API doc is online. For more code examples see the test files in the source tree.

Project home page

Information on the source tree, documentation, examples, issues and how to contribute, see

http://github.com/homonecloco/bioruby-faidx

The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.

Cite

If you use this software, please cite one of

Biogems.info

This Biogem is published at (http://biogems.info/index.html#bio-faidx)

Copyright

Copyright (c) 2014 homonecloco. See LICENSE.txt for further details.

You can’t perform that action at this time.