homonecloco edited this page May 12, 2016 · 11 revisions

Welcome to the expvip-web wiki! This wiki contains tutorials on how to setup the database and run it locally.

Updating the virtual machine Before loading the metadata, double click on update_expvip.sh in the desktop to get the latest version of expVIP.

  1. Loading Virtual Machine. Instructions on how to setup Virtual Box to run expVIP
  2. Loading Metadata. Detailed scripts in the virtual machine to prepare expVIP for your samples.
  3. Loading data. Description on how to prepare and load the data to expVIP.
  4. Running Kallisto. Instructions on how to run Kallisto and load the results in the database in a single step
  5. Running Kallisto in batch. Instructions on how to run Kallisto and load the results in the database in a single step from multiple samples
  6. Starting up the web server. Instructions on how to start the local web server for expVIP
  7. Exporting Data. How to extract data from expVIP database.
  8. Graphical Interface Tutorial. How to get the most of the expVIP graphical interface, exemplified with the Wheat Genome Browser.
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