diff --git a/README.md b/README.md index a09a030..45fd26b 100644 --- a/README.md +++ b/README.md @@ -14,19 +14,19 @@ Example Command: Example Output: ``` -Scaffold1 exonerate:protein2genome:local gene 188318 189587 649 - . ID=gene00012;Name=EDAN000750-PA;Target=EDAN000750-PA 1 129 +;Gap=M135 D884 M251 -Scaffold1 exonerate:protein2genome:local exon 189452 189587 . - . Parent=gene00012 -Scaffold1 exonerate:protein2genome:local exon 188318 188568 . - . Parent=gene00012 -Scaffold1 exonerate:protein2genome:local gene 183667 183897 392 - . ID=gene00013;Name=EDAN000750-PA;Target=EDAN000750-PA 127 203;Gap=M231 -Scaffold1 exonerate:protein2genome:local exon 183667 183897 . - . Parent=gene00013 -Scaffold1 exonerate:protein2genome:local gene 45007 45165 265 - . ID=gene00014;Name=EDAN000738-PA;Target=EDAN000738-PA 10 62;Gap=M159 -Scaffold1 exonerate:protein2genome:local exon 45007 45165 . - . Parent=gene00014 -Scaffold1 exonerate:protein2genome:local gene 218654 221996 1577 + . ID=gene00015;Name=EDAN000753-PA;Target=EDAN000753-PA 1 337 +;Gap=M30 D61 M100 D61 M127 D373 M181 D56 M225 D1183 M189 D604 M153 -Scaffold1 exonerate:protein2genome:local exon 218654 218685 . + . Parent=gene00015 -Scaffold1 exonerate:protein2genome:local exon 218745 218846 . + . Parent=gene00015 -Scaffold1 exonerate:protein2genome:local exon 218906 219034 . + . Parent=gene00015 -Scaffold1 exonerate:protein2genome:local exon 219406 219586 . + . Parent=gene00015 -Scaffold1 exonerate:protein2genome:local exon 219643 219867 . + . Parent=gene00015 -Scaffold1 exonerate:protein2genome:local exon 221051 221239 . + . Parent=gene00015 -Scaffold1 exonerate:protein2genome:local exon 221844 221996 . + . Parent=gene00015 +Scaffold1 exonerate:protein2genome:local match 188318 189587 649 - . ID=match00012;Name=EDAN000750-PA;Target=EDAN000750-PA 1 129 +;Gap=M135 D884 M251 +Scaffold1 exonerate:protein2genome:local match_part 189452 189587 . - . Parent=match00012 +Scaffold1 exonerate:protein2genome:local match_part 188318 188568 . - . Parent=match00012 +Scaffold1 exonerate:protein2genome:local match 183667 183897 392 - . ID=match00013;Name=EDAN000750-PA;Target=EDAN000750-PA 127 203;Gap=M231 +Scaffold1 exonerate:protein2genome:local match_part 183667 183897 . - . Parent=match00013 +Scaffold1 exonerate:protein2genome:local match 45007 45165 265 - . ID=match00014;Name=EDAN000738-PA;Target=EDAN000738-PA 10 62;Gap=M159 +Scaffold1 exonerate:protein2genome:local match_part 45007 45165 . - . Parent=match00014 +Scaffold1 exonerate:protein2genome:local match 218654 221996 1577 + . ID=match00015;Name=EDAN000753-PA;Target=EDAN000753-PA 1 337 +;Gap=M30 D61 M100 D61 M127 D373 M181 D56 M225 D1183 M189 D604 M153 +Scaffold1 exonerate:protein2genome:local match_part 218654 218685 . + . Parent=match00015 +Scaffold1 exonerate:protein2genome:local match_part 218745 218846 . + . Parent=match00015 +Scaffold1 exonerate:protein2genome:local match_part 218906 219034 . + . Parent=match00015 +Scaffold1 exonerate:protein2genome:local match_part 219406 219586 . + . Parent=match00015 +Scaffold1 exonerate:protein2genome:local match_part 219643 219867 . + . Parent=match00015 +Scaffold1 exonerate:protein2genome:local match_part 221051 221239 . + . Parent=match00015 +Scaffold1 exonerate:protein2genome:local match_part 221844 221996 . + . Parent=match00015 ```