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A Protparam compatible utility for bioruby.
Ruby
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README.md

bio-protparam

Build Status

bio-protparam adds Bio::Protparam class. Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPerl, except that it calculate parameters instead of throwing query to Expasy protparam tool.

Note: this software is under active development!

Installation

    gem install bio-protparam

Usage

    require 'bio'
    require 'bio-protparam'

    protparam = Bio::Protparam.new("MYNNYNLCHIRTINWEEIITGPSAMYSYVY...")
    # Return Mw
    protparam.molecular_weight
    # Return pI
    protparam.theorettical_pI

To use Expasy's protparam, pass a ':remote' option to constructor.

    require 'bio'
    require 'bio-protparam'

    protparam = Bio::Protparam.new("MYNNYNLCHIRTINWEEIITGPSAMYSYVY...", :remote)
    # Return Mw
    protparam.molecular_weight
    # Return pI
    protparam.theorettical_pI

The API doc is on rdoc.info. For more code examples see the test files in the source tree.

Cite

If you use this software, please cite one of

Biogems.info

This Biogem is published at #bio-protparam

Copyright

Copyright (c) 2012 hryk. See LICENSE.txt for further details.

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