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base fork: htgt/LIMS2-Tasks
base: 784753db6a
...
head fork: htgt/LIMS2-Tasks
compare: master
Checking mergeability… Don't worry, you can still create the pull request.
Commits on May 30, 2012
Ray Miller Update for new input field names 57db08a
Commits on Aug 01, 2012
Ray Miller Address Perl::Criitc issues 037e6a8
Ray Miller Implement CleanReportCache task 90a0ba6
Ray Miller v0.001
   Initial release.
5ba29c4
Commits on Sep 27, 2012
@sajp sajp add user when building lims2 model 3ca735a
@sajp sajp initial commit of cache report task d8c48a5
Commits on Oct 01, 2012
@sajp sajp delete entry from cached_report table if report generation takes long…
…er than allocated
30b26be
@sajp sajp fix name of config file f9170af
Commits on Oct 02, 2012
@sajp sajp Merge branch 'devel' 171d38a
@sajp sajp fix perlcritic issues 6e7d9db
@sajp sajp Merge branch 'devel' 27f63bc
@sajp sajp another perlcritic issue, ignoring this one 5ac2f2b
@sajp sajp Merge branch 'devel' 8bbef81
@sajp sajp v0.002
    Add pre-caching of lims2 reports task
bcab52a
Commits on Oct 05, 2012
@sajp sajp setup report caching to run in t87-solr and scp files into t87-catalyst a9d8b84
@sajp sajp Merge branch 'devel' 30bce83
@sajp sajp v0.003
    Pre-caching lims2 reports can now be done on another vm and the results copied into the t87-catalyst vm
7b45dda
Commits on Oct 10, 2012
@sajp sajp ENV{USER} not set when running script via cron job, also bash script …
…used in cron job already checks for correct user
056b1f9
@sajp sajp Merge branch 'devel' f31918c
@sajp sajp remove check for right host as well 472517d
@sajp sajp Merge branch 'devel' ad35ba2
@sajp sajp v0.004
    Drop checks for user and host in report pre-caching script
72023c1
Commits on Oct 17, 2012
@sajp sajp make max processes a optional parameter, defaults to 2 66f48a0
@sajp sajp v0.005
    Make max-processes an argument to the report cache script, defaults to 2
0536683
Commits on Apr 03, 2013
@sajp sajp add task to create design plate d181330
Commits on Apr 18, 2013
@sajp sajp add new task for creating projects 9d018ec
@sajp sajp remove extra whitespace 05654e7
Commits on Apr 19, 2013
@sajp sajp force overnight report caching 300d2d4
@sajp sajp add return to sub 227a152
@sajp sajp ignore perlcritic warning about complex map functions 087610a
@sajp sajp v0.006
    Add create design plate command.
    Add create project command.
    Modfiy report cache task to force caching of reports.
ed48077
@sajp sajp allow design wells to be created with no bacs if none available f345858
@sajp sajp v0.007
    Design plate creation task allows creation of design wells with no bacs.
1dcb426
Commits on May 17, 2013
@andrewsparkes andrewsparkes Updated to include projects.species_id and to work with Cre Knockin p…
…rojects
390ef33
Commits on May 22, 2013
@andrewsparkes andrewsparkes v0.008
    Updated create project command to add species and create Cre Knockin projects.
1c37f30
Commits on May 28, 2013
@sajp sajp add task for loading crispr sites 74aa284
@sajp sajp Merge branch 'master' of github.com:htgt/LIMS2-Tasks 667fbcf
Commits on May 29, 2013
@sajp sajp add species to create design plate tasj 66c005c
@sajp sajp add task to create crispr plate 0ccf834
Commits on May 31, 2013
@sajp sajp v0.009
    Add load crispr data task.
    Add create crispr plate task.
b2cc73e
Commits on Jun 13, 2013
@sajp sajp add command to load design targets from yaml file 1a82b9a
Commits on Jun 14, 2013
@sajp sajp remove checks for already existing design target, that is now done in…
… the model method
2e406f0
Commits on Oct 25, 2013
@sajp sajp add option to load up design plate with no bacs, used for human gibso…
…n designs
fa7598d
Commits on Feb 18, 2014
@af11-sanger af11-sanger changed design plugin method names to c_* as these are now in WebApp-…
…Common
4437a8d
@af11-sanger af11-sanger merged master into devel f050612
@af11-sanger af11-sanger perlcritic fix 0d43283
@af11-sanger af11-sanger v0.010
	Updated to use design plugin methods from WebApp-Common
316dd9b
@af11-sanger af11-sanger v0.010 bbca86b
Commits on Apr 24, 2014
@sajp sajp add EUCOMMTools Recovery sponsor to create projects task 30b7496
@sajp sajp Merge branch 'devel' of github.com:htgt/LIMS2-Tasks into devel 6337286
Commits on Jul 03, 2014
@sajp sajp fix subroutine name 5a01146
@sajp sajp design phase is not compulsory in a design in lims2 a6cb5b4
@sajp sajp add new project f7b49dc
Commits on Jul 04, 2014
@sajp sajp remove surplus statment 4ed624d
@sajp sajp Merge branch 'master' into devel 8744f40
@sajp sajp v0.011
    Bugfixes, new project.
8dd4c1e
Commits on Aug 13, 2014
@sajp sajp default to no bacs for Human design plates, Mouse plates still want bacs 698c2f8
Commits on Aug 14, 2014
@tg6 tg6 Added LoadCrisprGroups task 72c47bc
@tg6 tg6 LoadCrisprGroups model import change 5928c7e
@tg6 tg6 Merge branch 'devel' of github.com:htgt/LIMS2-Tasks into devel b275199
@tg6 tg6 Added commit flag to load-crispr-groups task b911cb4
@tg6 tg6 load_crispr_groups description updated f4becbf
Commits on Aug 15, 2014
@sajp sajp initial commit of task to merge 2 gibson designs into a new gibson de…
…sign
8836e0e
@sajp sajp updated description 3fd2df6
Commits on Sep 08, 2014
@ah19 ah19 Added well barcode task 6473ea4
@ah19 ah19 Merge branch 'devel' of github.com:htgt/LIMS2-Tasks into devel fdd3ba9
Commits on Dec 02, 2014
@sajp sajp send in empty hash ref if no report params 3c635a2
@sajp sajp ignore tmp dir 83a23c7
@sajp sajp perlcritic whitespace fix 56cd85e
@sajp sajp v0.012
    Bugfixes
38b519d
Commits on Feb 19, 2015
@sajp sajp initial commit of new task to load nonsense crispr and oligo data int…
…o LIMS2
b03c6fd
@sajp sajp bugfixes and updated pod 7c10c66
Commits on Feb 23, 2015
@sajp sajp v0.013
    Add new task for loading nonsense crisprs and designs
d329703
Commits on Mar 05, 2015
@af11-sanger af11-sanger design primer generation can be run on plate creation. crispr primers…
… will also be generated if they are in the plate data file
5afe070
Commits on Mar 12, 2015
@af11-sanger af11-sanger create primers for all crisprs linked to design which do not already …
…have primers
a6fa632
Commits on Mar 17, 2015
@af11-sanger af11-sanger removed some debug statements ebb1ec7
@af11-sanger af11-sanger update create-design-plate help 1fc1ec3
@af11-sanger af11-sanger perlcritic fix 6196431
@af11-sanger af11-sanger percritic fixes fb23682
@af11-sanger af11-sanger v0.014
    Added primer generation during design plate creation
e304cfc