Modification 23 to add FINAL_PICK columns to summaries table

ddl/templates/versions/23/fixtures.sql

@@ -0,0 +1,2 @@
+INSERT INTO schema_versions(version)
+VALUES (23);

ddl/templates/versions/23/up.sql

@@ -0,0 +1,130 @@
+DROP TABLE IF EXISTS public.summaries;
+
+CREATE TABLE public.summaries (
+--"DESIGN: design_gene_id,design_gene_symbol,design_bacs,design_plate_name,design_plate_id,design_well_name,design_well_id,design_well_created_ts,design_type,design_phase,design_name,design_id,design_well_assay_complete,design_well_accepted,"
+	design_gene_id text,
+	design_gene_symbol text,
+	design_bacs text,
+	design_plate_name text,
+	design_plate_id integer,
+	design_well_name text,
+	design_well_id integer,
+	design_well_created_ts timestamp without time zone,
+	design_type text,
+	design_phase integer,
+	design_name text,
+	design_id integer,
+	design_well_assay_complete timestamp without time zone,
+	design_well_accepted boolean,
+--"INT: int_plate_name,int_plate_id,int_well_name,int_well_id,int_well_created_ts,int_qc_seq_pass,int_cassette,int_backbone,int_well_assay_complete,int_well_accepted,"
+	int_plate_name text,
+	int_plate_id integer,
+	int_well_name text,
+	int_well_id integer,
+	int_well_created_ts timestamp without time zone,
+	int_qc_seq_pass boolean,
+	int_cassette_name text,
+	int_backbone_name text,
+	int_well_assay_complete timestamp without time zone,
+	int_well_accepted boolean,
+--"FINAL: final_plate_name,final_plate_id,final_well_name,final_well_id,final_well_created_ts,final_recombinase,final_qc_seq_pass,final_cassette,final_backbone,final_well_assay_complete,final_well_accepted,"
+	final_plate_name text,
+	final_plate_id integer,
+	final_well_name name,
+	final_well_id integer,
+	final_well_created_ts timestamp without time zone,
+	final_recombinase_id text,
+	final_qc_seq_pass boolean,
+	final_cassette_name text,
+	final_cassette_cre boolean,
+	final_cassette_promoter boolean,
+	final_cassette_conditional boolean,
+	final_backbone_name text,
+	final_well_assay_complete timestamp without time zone,
+	final_well_accepted boolean,
+--"FINAL_PICK: final_pick_plate_name,final_pick_plate_id,final_pick_well_name,final_pick_well_id,final_pick_well_created_ts,final_pick_recombinase,final_pick_qc_seq_pass,final_pick_cassette,final_pick_backbone,final_pick_well_assay_complete,final_pick_well_accepted,"
+	final_pick_plate_name text,
+	final_pick_plate_id integer,
+	final_pick_well_name name,
+	final_pick_well_id integer,
+	final_pick_well_created_ts timestamp without time zone,
+	final_pick_recombinase_id text,
+	final_pick_qc_seq_pass boolean,
+	final_pick_cassette_name text,
+	final_pick_cassette_cre boolean,
+	final_pick_cassette_promoter boolean,
+	final_pick_cassette_conditional boolean,
+	final_pick_backbone_name text,
+	final_pick_well_assay_complete timestamp without time zone,
+	final_pick_well_accepted boolean,
+--"DNA: dna_plate_name,dna_plate_id,dna_well_name,dna_well_id,dna_well_created_ts,dna_qc_seq_pass,dna_status_pass,dna_quality,dna_well_assay_complete,dna_well_accepted,"
+	dna_plate_name text,
+	dna_plate_id integer,
+	dna_well_name text,
+	dna_well_id integer,
+	dna_well_created_ts timestamp without time zone,
+	dna_qc_seq_pass boolean,
+	dna_status_pass boolean,
+	dna_quality text,
+	dna_well_assay_complete timestamp without time zone,
+	dna_well_accepted boolean,
+--"EP: ep_plate_name,ep_plate_id,ep_well_name,ep_well_id,ep_well_created_ts,ep_first_cell_line,ep_colonies_picked,ep_colonies_total,ep_colonies_rem_unstained,ep_well_assay_complete,ep_well_accepted,
+	ep_plate_name text,
+	ep_plate_id integer,
+	ep_well_name text,
+	ep_well_id integer,
+	ep_well_created_ts timestamp without time zone,
+	ep_first_cell_line_name text,
+	ep_colonies_picked integer,
+	ep_colonies_total integer,
+	ep_colonies_rem_unstained integer,
+	ep_well_assay_complete timestamp without time zone,
+	ep_well_accepted boolean,
+--"EP_PICK: ep_pick_plate_name,ep_pick_plate_id,ep_pick_well_name,ep_pick_well_id,ep_pick_well_created_ts,ep_pick_qc_seq_pass,ep_pick_well_assay_complete,ep_pick_well_accepted,"
+	ep_pick_plate_name text,
+	ep_pick_plate_id integer,
+	ep_pick_well_name text,
+	ep_pick_well_id integer,
+	ep_pick_well_created_ts timestamp without time zone,
+	ep_pick_qc_seq_pass boolean,
+	ep_pick_well_assay_complete timestamp without time zone,
+	ep_pick_well_accepted boolean,
+--"SEP: sep_plate_name,sep_plate_id,sep_well_name,sep_well_id,sep_well_created_ts,sep_second_cell_line,sep_well_assay_complete,sep_well_accepted,"
+	sep_plate_name text,
+	sep_plate_id integer,
+	sep_well_name text,
+	sep_well_id integer,
+	sep_well_created_ts timestamp without time zone,
+	sep_second_cell_line_name text,
+	sep_well_assay_complete timestamp without time zone,
+	sep_well_accepted boolean,
+--"SEP_PICK: sep_pick_plate_name,sep_pick_plate_id,sep_pick_well_name,sep_pick_well_id,sep_pick_well_created_ts,sep_pick_qc_seq_pass,sep_pick_well_assay_complete,sep_pick_well_accepted,
+	sep_pick_plate_name text,
+	sep_pick_plate_id integer,
+	sep_pick_well_name text,
+	sep_pick_well_id integer,
+	sep_pick_well_created_ts timestamp without time zone,
+	sep_pick_qc_seq_pass boolean,
+	sep_pick_well_assay_complete timestamp without time zone,
+	sep_pick_well_accepted boolean,
+--"FP: fp_plate_name,fp_plate_id,fp_well_name,fp_well_id,fp_well_created_ts,fp_well_assay_complete,fp_well_accepted
+	fp_plate_name text,
+	fp_plate_id integer,
+	fp_well_name text,
+	fp_well_id integer,
+	fp_well_created_ts timestamp without time zone,
+	fp_well_assay_complete timestamp without time zone,
+	fp_well_accepted boolean,
+--"SFP: sfp_plate_name,sfp_plate_id,sfp_well_name,sfp_well_id,sfp_well_created_ts,sfp_well_assay_complete,sfp_well_accepted,
+	sfp_plate_name text,
+	sfp_plate_id integer,
+	sfp_well_name text,
+	sfp_well_id integer,
+	sfp_well_created_ts timestamp without time zone,
+	sfp_well_assay_complete timestamp without time zone,
+	sfp_well_accepted boolean
+
+);
+
+GRANT SELECT ON summaries TO "[% ro_role %]";
+GRANT SELECT, INSERT, UPDATE, DELETE ON summaries TO "[% rw_role %]";

lib/LIMS2/Model/Schema/Result/Project.pm

@@ -56,6 +56,17 @@ __PACKAGE__->table("projects");
   data_type: 'text'
   is_nullable: 0
 
+=head2 gene_id
+
+  data_type: 'text'
+  is_nullable: 1
+
+=head2 targeting_type
+
+  data_type: 'text'
+  default_value: 'unknown'
+  is_nullable: 0
+
 =cut
 
 __PACKAGE__->add_columns(
@@ -70,6 +81,10 @@ __PACKAGE__->add_columns(
   { data_type => "text", is_foreign_key => 1, is_nullable => 0 },
   "allele_request",
   { data_type => "text", is_nullable => 0 },
+  "gene_id",
+  { data_type => "text", is_nullable => 1 },
+  "targeting_type",
+  { data_type => "text", default_value => "unknown", is_nullable => 0 },
 );
 
 =head1 PRIMARY KEY
@@ -101,21 +116,6 @@ __PACKAGE__->has_many(
   { cascade_copy => 0, cascade_delete => 0 },
 );
 
-=head2 project_information
-
-Type: might_have
-
-Related object: L<LIMS2::Model::Schema::Result::ProjectInformation>
-
-=cut
-
-__PACKAGE__->might_have(
-  "project_information",
-  "LIMS2::Model::Schema::Result::ProjectInformation",
-  { "foreign.project_id" => "self.id" },
-  { cascade_copy => 0, cascade_delete => 0 },
-);
-
 =head2 sponsor
 
 Type: belongs_to
@@ -132,8 +132,8 @@ __PACKAGE__->belongs_to(
 );
 
 
-# Created by DBIx::Class::Schema::Loader v0.07022 @ 2013-01-31 13:25:49
-# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:EK0NTLsJ93TZ3JSUaIMy4w
+# Created by DBIx::Class::Schema::Loader v0.07022 @ 2013-01-31 14:29:37
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:VqJT+ZOA2ycgAxa4EUXXew
 
 
 # You can replace this text with custom code or comments, and it will be preserved on regeneration