Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with
or
.
Download ZIP

Comparing changes

Choose two branches to see what's changed or to start a new pull request. If you need to, you can also compare across forks.

Open a pull request

Create a new pull request by comparing changes across two branches. If you need to, you can also compare across forks.
This comparison is big! We're only showing the most recent 250 commits
Commits on Dec 05, 2012
@af11-sanger af11-sanger ExtJS update of well_targeting_pass now working 6be8322
Commits on Dec 06, 2012
@af11-sanger af11-sanger test and fixture data updated. perlcritic issues fixed a4ca89d
@af11-sanger af11-sanger Merge branch 'devel' into qc_template_process_types c19aad7
@af11-sanger af11-sanger merged devel into genotyping_results b3cddaa
@af11-sanger af11-sanger fixed perlcritic issues. removed tests for well_genotyping_results me…
…thods as work on these is ongoing
6e2cecf
@af11-sanger af11-sanger Merge branch 'devel' e473231
@af11-sanger af11-sanger v0.035
	Added cassette, backbone and recombinase parameters to QC template wells
        Plate creation from QC infers process type from QC template wells
	Added tables to store well genotyping result data (upload/update interface work in progress)
eba1330
@af11-sanger af11-sanger Added cassette, backbone and recombinase parameters to QC template w…
…ells

        Plate creation from QC infers process type from QC template wells
	Added tables to store well genotyping result data (upload/update interface work in progress)
b3d6494
Commits on Dec 07, 2012
@pm9-sanger pm9-sanger add cre boolean to cassette table 7d45de3
@pm9-sanger pm9-sanger fix picks accepted validation ced1a02
@dparrysmith dparrysmith Added virtual plate checkbox to Plate Upload interface - Model TODO 6b7118d
@pm9-sanger pm9-sanger Merge branch 'devel' 8aa0ae3
Commits on Dec 10, 2012
@af11-sanger af11-sanger update to schema to allow genotyping results values to be null a77ce7a
@pm9-sanger pm9-sanger v0.036
    Fixed sponsor report bugs. Report should now report the correct numbers.
bf94290
@pm9-sanger pm9-sanger Fixed sponsor report bugs. Report should now report the correct numb…
…ers.
d05eb1c
@af11-sanger af11-sanger fixed small bugs in genotyping result methods and turned on tests for…
… them
17e54d4
@af11-sanger af11-sanger Merge branch 'devel' into genotyping_results 758f257
@af11-sanger af11-sanger added search page to access genotyping qc results 617dd13
@dparrysmith dparrysmith Added virtual plate checkbox to plate upload for rearray process d7fad75
@dparrysmith dparrysmith Attended to percritic issues 115536f
@dparrysmith dparrysmith Merge branch 'devel' into vplate_flag a46c4bc
Commits on Dec 11, 2012
@af11-sanger af11-sanger added genotyping result upload page and supporting plugin f677b6b
@dparrysmith dparrysmith Added tests for virtual plate creation ec89f00
@dparrysmith dparrysmith Merge branch 'devel' c577671
@dparrysmith dparrysmith v0.037
	Added virtual plate checkbox to plate upload interface
f8a0d4c
@dparrysmith dparrysmith Added virtual plate checkbox to plate upload interface 9d393cb
@af11-sanger af11-sanger fixes to genotyping data upload d4d27ed
Commits on Dec 12, 2012
@af11-sanger af11-sanger improvements to genotyping QC upload based on feedback from Tony f2c7339
@af11-sanger af11-sanger changed genotyping result ranking and added more result types 0d12f3b
Commits on Dec 13, 2012
@af11-sanger af11-sanger targeting-puro_pass result now handled b98ce44
@dparrysmith dparrysmith Added combo selection box to grid layout for genotyping QC 1fc4566
@af11-sanger af11-sanger added help and template spreadsheet for genotyping qc data upload 9047598
@af11-sanger af11-sanger allow upload of well primer band status 55e6289
Commits on Dec 17, 2012
@af11-sanger af11-sanger plate relation graph - a first attempt 251c625
Commits on Dec 18, 2012
@dparrysmith dparrysmith Merge branch 'genotyping_results' of github.com:htgt/LIMS2-WebApp int…
…o genotyping_results
719712a
@pm9-sanger pm9-sanger add recombinase upload fbdcc44
Commits on Dec 19, 2012
@af11-sanger af11-sanger graph drawing moved to module. condensed plates with very similar names 02dc32f
@dparrysmith dparrysmith Added combo lists to various fields in extJS grid panel 5b62c17
@dparrysmith dparrysmith Merge branch 'genotyping_results' of github.com:htgt/LIMS2-WebApp int…
…o genotyping_results
02f5e70
Commits on Dec 20, 2012
@sajp sajp bugfix, called next instead of return 8cb5d20
@sajp sajp Merge branch 'devel' 089e542
@sajp sajp Bugfix, Genes To Electroporate report. 419022c
@sajp sajp v0.038
    Bugfix, Genes To Electroporate report.
a27d511
@af11-sanger af11-sanger added tests for GenotypingQC plugin 1d0817e
@af11-sanger af11-sanger Merge branch 'genotyping_results' of github.com:htgt/LIMS2-WebApp int…
…o genotyping_results
4bd309f
Commits on Dec 21, 2012
@sajp sajp fix another next instead of return bug 2075b71
@sajp sajp Merge branch 'master' into devel 1c16669
@sajp sajp v0.039
    Another bugfix to Genes To Electroporate report.
343822a
@sajp sajp Another bugfix to Genes To Electroporate report. bc6d950
@pm9-sanger pm9-sanger added colony count upload c19d191
@pm9-sanger pm9-sanger add well data to navigation bar 7e78050
@pm9-sanger pm9-sanger add help for colony counts 701bba9
Commits on Jan 02, 2013
@sajp sajp code review 34c624e
Commits on Jan 04, 2013
@pm9-sanger pm9-sanger Code review corrections 561ed88
@dparrysmith dparrysmith Added display of LRPCR and TRPCR bands to extJS interface
Requires commit of updates to the database to be implemented.
Also added column for gene name and locked the well and gene name
columns.
93776c9
@dparrysmith dparrysmith Merge branch 'genotyping_results' of github.com:htgt/LIMS2-WebApp int…
…o genotyping_results
6038cd6
Commits on Jan 07, 2013
@af11-sanger af11-sanger show list of plate names on condensed nodes 2971dff
@af11-sanger af11-sanger added some genotyping qc data API tests 2a225dc
@af11-sanger af11-sanger Merge branch 'genotyping_results' of github.com:htgt/LIMS2-WebApp int…
…o genotyping_results
d1dbb50
Commits on Jan 08, 2013
@af11-sanger af11-sanger Added deisgns method to well to fetch multiple related designs da3510c
@pm9-sanger pm9-sanger Tests 099bbd2
@dparrysmith dparrysmith Comments adebugging ouput for genotyping QC interface 5995e47
@dparrysmith dparrysmith Merge branch 'genotyping_results' of github.com:htgt/LIMS2-WebApp int…
…o genotyping_results
58d91fe
Commits on Jan 09, 2013
@af11-sanger af11-sanger plate relation option added to well relation view page e2405d5
@af11-sanger af11-sanger Merge branch 'devel' into plate_graph 24b427d
@af11-sanger af11-sanger perlcritic fixes 75bd093
@af11-sanger af11-sanger Merge branch 'devel' 28097b7
@pm9-sanger pm9-sanger added tests to improved test coverage c5c4672
@af11-sanger af11-sanger v0.040
	Added plate relation view
766e815
@af11-sanger af11-sanger Added plate relation view df40433
@pm9-sanger pm9-sanger Merge branch 'devel' into add_dre_recominbase_process_to_EPs 550f45c
@pm9-sanger pm9-sanger Merge branch 'master' into devel 1445aad
@pm9-sanger pm9-sanger v0.041
    Added forms to append recombinase to a process attached to a well and add colony counts to a well.
728cf72
@pm9-sanger pm9-sanger Added forms to append recombinase to a process attached to a well an…
…d add colony counts to a well.
ac7ccd3
Commits on Jan 10, 2013
@af11-sanger af11-sanger fixed qc test result retrieval bug d73045f
@af11-sanger af11-sanger Merge branch 'devel' into qc_view_fix f78afca
@af11-sanger af11-sanger Merge branch 'devel' 72ffef4
@af11-sanger af11-sanger v0.042
	Fixed bug in QC test result retrieval
de45a1d
@af11-sanger af11-sanger Fixed bug in QC test result retrieval b94df98
Commits on Jan 11, 2013
@dparrysmith dparrysmith Added dispatch table and back end support for genotyping assay update…
…s (to be completed)
43844b6
Commits on Jan 17, 2013
@af11-sanger af11-sanger added QC template creation help and changed layout of template creati…
…on page so users can see link to help without scrolling
982db36
Commits on Jan 22, 2013
@sajp sajp add sequence for designs.id column 7d84d7b
@sajp sajp make id, name and created_at values optional when creating design, id…
… and created_at have a default value set if this is the case
36822f6
@sajp sajp refresh design object is as_hash method ea64a57
Commits on Jan 23, 2013
@sajp sajp make new db version 18, do not want to mess up sequence aca3de8
@sajp sajp add test for creating design without specifying a id or created at date 09b18de
@dparrysmith dparrysmith Changes to implement storing of genotyping QC data modified in the ex…
…tJS grid back into the model.

The various types of genotyping QC (well_targeting_pass type, primer
band type and generic assay (call,copy number, range, confidence) are
now supported.

Various changes to the grid layout for feedback from users.

Tests written to support the well plugin changes.
3303edb
@dparrysmith dparrysmith Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into genotyping_…
…results

Conflicts:
	lib/LIMS2/Model/Plugin/Well.pm
	root/lib/navigation.tt
cb1cdb0
@sajp sajp name is now optional when creating a design 7abfbe5
@dparrysmith dparrysmith Corrected message in update_or_create_well_primer_bands 4317313
@dparrysmith dparrysmith typo fixed in comment 3a7b00d
@af11-sanger af11-sanger add project description tables for use in creating new sponsor progre…
…ss report
a60c5fc
@dparrysmith dparrysmith Streamlined the genotyping QC update methods by parameterising them 1cde416
Commits on Jan 24, 2013
@dparrysmith dparrysmith Added a faster data retrieval method for pushing genotyping QC data b…
…ack to the browser

This method executes SQL on the database without going through the
model. It cuts response time by half. The downside is, we have plain SQL
to deal with. The efficiency gain may not be worth the effort.
6496b40
@dparrysmith dparrysmith Added design_id to the extJS grid for Plate Genotyping QC Results View 6cccb39
@dparrysmith dparrysmith Added design_id datum item to model data retrieval for Genotyping QC …
…Results View

This is the retrieval method that uses the model (DBIx Class) for data
retrieval.
e0d349a
@sajp sajp fix schema version 273411c
@sajp sajp Merge branch 'master' into devel 9de5437
@sajp sajp Added a sequence onto the id column in the designs table.
    Made id, name and created_at parameters optional when creating a new design.
b3df747
@sajp sajp v0.043
    Added a sequence onto the id column in the designs table.
    Made id, name and created_at parameters optional when creating a new design.
9fd78f9
@dparrysmith dparrysmith Fixed fast browse issue missing smoe data off the structure returned …
…to the browser
194d345
@dparrysmith dparrysmith Corrected references to primer_band_update method and added tr_pcr ba…
…nd to list to be processed
b7cbf1e
@af11-sanger af11-sanger sponsor progress report now generated from project info tables and we…
…ll summaries. needs proper testing
3d462f9
@dparrysmith dparrysmith Added support for gene symbols in genotyping QC grid e96ffa0
@af11-sanger af11-sanger allele request json fields for single targeted projects now handled c…
…orrectly
d299539
Commits on Jan 25, 2013
@andrewsparkes andrewsparkes Initial versions of summary data generation. 09527bf
@andrewsparkes andrewsparkes Added recursion methods and SQL changes 0438d28
@dparrysmith dparrysmith Corrected the method to refrsh a single row of genotyping QC data to …
…use the new gene symbol method

Modified the grid size to be 750x1200

Implemented a gene_name cache, whcih is useful for examples in which the
plate has only a few different genes repeated in several wells.
daaa9a6
Commits on Jan 28, 2013
@dparrysmith dparrysmith Fixed perlcritic issues. 22463a7
@dparrysmith dparrysmith Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into genotyping_…
…results

Conflicts:
	ddl/templates/versions/18/up.sql
46231cc
Commits on Jan 29, 2013
@andrewsparkes andrewsparkes version for pushing to branch, has memory leak 971d5a3
@af11-sanger af11-sanger Vector wells now filtered by mutation/design type c15f3d7
@af11-sanger af11-sanger Merge branch 'flatten_projects' of github.com:htgt/LIMS2-WebApp into …
…flatten_projects
04c16cf
@dparrysmith dparrysmith Corrected and extended t/70 test and added supporting data to fixture…
…s and corrected order of sql delete statements in fixtures
0eea379
@dparrysmith dparrysmith Prevent grid from scrolling to top on datastore load ad07ff4
@dparrysmith dparrysmith Merge branch 'devel' 7c081b5
@dparrysmith dparrysmith v0.044
    Added genotyping QC csv upload, grid view and update support
bc675a3
@dparrysmith dparrysmith Added genotyping QC csv upload, grid view and update support 662c7c3
Commits on Jan 30, 2013
@af11-sanger af11-sanger Make starts_with well a weak ref in attempt to fix memory leak 5ab1426
@af11-sanger af11-sanger moved fields from project_information table into existing projects table ed9d19d
@af11-sanger af11-sanger removing DBIx::Class schema for project_information table 9ad8bf7
@af11-sanger af11-sanger Set well accepted flag to qc pass result when creating plates from QC ebd655c
@dparrysmith dparrysmith Added database migration to add FINAL_PICK plate type f6147cf
@dparrysmith dparrysmith Added audit sql role placeholders to the template migration for FINAL…
…_PICK
850bcf2
Commits on Jan 31, 2013
@andrewsparkes andrewsparkes Summary data generated by process pool b5d8fb9
@andrewsparkes andrewsparkes Merge branch 'flatten_projects' of github.com:htgt/LIMS2-WebApp into …
…flatten_projects
97eed11
@dparrysmith dparrysmith Amended wrapper.tt to use c.uri_for to return the correct location fo…
…r ext-all.css
531e664
@af11-sanger af11-sanger added test that well accepted flag is set from qc result 00ea63a
@dparrysmith dparrysmith Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into genotyping_…
…results
eb0c95a
@dparrysmith dparrysmith Merge branch 'devel' d43e107
@andrewsparkes andrewsparkes Added FINAL_PICK plate type to summaries table and data creation 5fab9e1
@dparrysmith dparrysmith Amended path in genotyping_qc_data template to return properly forme…
…d URL so that extJS widgets render properly
afd64b9
@dparrysmith dparrysmith v0.045
    Amended path in genotyping_qc_data template to return properly formed URL so that extJS widgets render properly
756c0d4
@andrewsparkes andrewsparkes Modification 23 to add FINAL_PICK columns to summaries table 3bae902
@af11-sanger af11-sanger Generate meaningful error message when well cannot be deleted due to …
…related qc template
e62b320
Commits on Feb 01, 2013
@dparrysmith dparrysmith Amended genotyping browse query to return all rows for a plate even w…
…here there is no genotyping qc data
f956353
@andrewsparkes andrewsparkes Improved efficiency of process by re-using DESIGN well info 61c0454
Commits on Feb 04, 2013
@dparrysmith dparrysmith Updated comment to use update_or_create_well_primer_band method 1d4d34a
@af11-sanger af11-sanger perlcritic fix 817b50d
@af11-sanger af11-sanger added some cassette function tests 76fb38a
@dparrysmith dparrysmith Corrected genotyping QC list code for non-existent design
A test was failing in t/70 following the outer join SQL amendment to
bring back all rows in a plate even if there is no genotyping QC data
associated. This was owing to ancestral wells not being available in
test fixture data.

The code has been corrected in genotyping QC so that shuld thi shappen
in a live situation '-' symbols will be displayed under the design
heading and no gene symbol will be available.
f30e81b
@dparrysmith dparrysmith Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into devel c64bcfd
@af11-sanger af11-sanger merged changes from devel into flatten_projects bracnh 19be18b
Commits on Feb 05, 2013
@andrewsparkes andrewsparkes Renamed summary data generation files and preparing for running as a …
…cron job
31689b0
@ah19 ah19 Changed kill qc jobs command to use HTGT API as VMs dont have qc inst…
…alled.
cb47821
@andrewsparkes andrewsparkes Before code walkthrough 76ce03c
@ah19 ah19 Merge branch 'devel' ec4c131
@ah19 ah19 Fixed killing of QC jobs, and added colouring to table rows showing …
…qc runs.
31eb4e9
@ah19 ah19 v0.046
    Fixed killing of QC jobs, and added colouring to table rows showing qc runs.
91aa36e
Commits on Feb 06, 2013
@af11-sanger af11-sanger added some comments to plate_create bfbf209
@af11-sanger af11-sanger fixed mistake in error message text aa1f9e9
@af11-sanger af11-sanger qc template creation - allow lower case wells names in csv upload 95fd50d
@af11-sanger af11-sanger display type of template selected during qc job submission 7a7e458
@andrewsparkes andrewsparkes Summaries data generation code after first session of refactoring 7943f5b
@andrewsparkes andrewsparkes Merge branch 'flatten_projects' of github.com:htgt/LIMS2-WebApp into …
…flatten_projects
385ac18
@andrewsparkes andrewsparkes Fixed bug in SEP wells and cleaned after Perlcritic 8f31e62
Commits on Feb 07, 2013
@af11-sanger af11-sanger added QC run deletion method to plugin 881717b
@andrewsparkes andrewsparkes Initial deployment version 377ef89
@af11-sanger af11-sanger test for true/false of well recombinase instead of using defined (ing…
…ore empty strings)
1c6e0d7
@af11-sanger af11-sanger Merge branch 'flatten_projects' of github.com:htgt/LIMS2-WebApp into …
…flatten_projects
cc86b64
@andrewsparkes andrewsparkes Merge branch 'devel' into flatten_projects a4ff9c7
@af11-sanger af11-sanger perlcritic fixes 639f966
@andrewsparkes andrewsparkes Merge branch 'devel' b5f6be9
@af11-sanger af11-sanger more perlcritic fixing 44cd885
@andrewsparkes andrewsparkes Merge branch 'devel' 4857b77
@andrewsparkes andrewsparkes Added summaries table and data generation process.
	Sponser report now generated from summaries table.
9c42ce6
@andrewsparkes andrewsparkes v0.047
	Added summaries table and data generation process.
	Sponser report now generated from summaries table.
6645d35
Commits on Feb 11, 2013
@andrewsparkes andrewsparkes Moved files to scripts directory from bin b3c378e
@andrewsparkes andrewsparkes Merge branch 'master' into devel 481e271
@andrewsparkes andrewsparkes v0.048
	Moved populate project info and create summaries files to scripts directory.
37c93de
@andrewsparkes andrewsparkes Moved populate project info and create summaries files to scripts di…
…rectory.
89d184a
@andrewsparkes andrewsparkes Changed user in summaries creation from webapp to tasks 67fefeb
@andrewsparkes andrewsparkes Merge branch 'master' into devel 7724c43
@andrewsparkes andrewsparkes Changed role in summaries code from webapp to tasks. 5f683c7
@andrewsparkes andrewsparkes v0.049
	Changed role in summaries code from webapp to tasks.
5711138
Commits on Feb 12, 2013
@af11-sanger af11-sanger Added QC template and QC run delete options for users 32ba665
@af11-sanger af11-sanger Merge branch 'devel' into delete_qc 2e298ab
Commits on Feb 15, 2013
@andrewsparkes andrewsparkes Initial commit for summaries testing changes d9ffe62
@dparrysmith dparrysmith Initial commit of ProcessTree plugin and test
ProcessTree uses recursive database queries to traverse the
process_input_well and process_output_well tree keeping track of
paths (aka trails).

Also provides fast access to design well information from plates fo
wells further down in teh hierarchy.
29b7ead
Commits on Feb 18, 2013
@af11-sanger af11-sanger 10-lims2-test.t now forces reload of fixture data 41db183
@andrewsparkes andrewsparkes Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into andrew_summ…
…aries
d8fb364
@dparrysmith dparrysmith Modified ProcessTree tests f1e2dc7
Commits on Feb 19, 2013
@dparrysmith dparrysmith Completed initial tests for path retrieval and started testing for pl…
…ate design retrieval
bc05511
@dparrysmith dparrysmith Further test development for ancestors of wells f057e5b
@dparrysmith dparrysmith Added button to uplaod plate to specify create by copy from vector plate 4ee5121
@andrewsparkes andrewsparkes Tests for summaries generation and modified to use ProcessTree 48ec330
@dparrysmith dparrysmith Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into process_tree a609b14
@dparrysmith dparrysmith Commented out tests under development 1dc1919
@andrewsparkes andrewsparkes Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into andrew_summ…
…aries
cbe6b0b
@andrewsparkes andrewsparkes Modified summaries well descend to use new version of ProcessTree a6a0a16
@af11-sanger af11-sanger rewrite GenesToElectroporate report - work in progress 0a67f9f
@andrewsparkes andrewsparkes Fixed PerlCritic issues a01dde8
@andrewsparkes andrewsparkes Merge branch 'master' into devel 92da7bb
@af11-sanger af11-sanger work in progress 7027ba6
@af11-sanger af11-sanger Force commit after reload of fixture data fb83015
@andrewsparkes andrewsparkes Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into devel 7cb32b4
@andrewsparkes andrewsparkes Perlcritic fix a943a35
@andrewsparkes andrewsparkes v0.050
	Added Summaries test script. Modified summaries to use ProcessTree.
1956926
@andrewsparkes andrewsparkes Added Summaries test script. Modified summaries to use ProcessTree. cf827ca
@ah19 ah19 Added functionality to find LBL genes from the GeneDesign table, and …
…produce a CSV of their results.
1036de4
@dparrysmith dparrysmith Added 'Copy' item to Plates menu on the navigation bar.
Implementing changes to controller to support the new function.
293c197
@ah19 ah19 Merge branch 'devel' into design_genes eae97e9
@ah19 ah19 Merge branch 'master' into devel 2786f57
@af11-sanger af11-sanger GenesToElectroporate bug fix 60b9bd0
@af11-sanger af11-sanger Merge branch 'devel', remote branch 'origin' into genes_to_ep 6161a3d
@ah19 ah19 Added functionality to view LBL genes in the DesignGene table. 17c3f1a
@ah19 ah19 v0.051
    Added functionality to view LBL genes in the DesignGene table.
46711ca
@af11-sanger af11-sanger bug fix. DNA plate id was being stored as plate name 0f1e67b
Commits on Feb 20, 2013
@af11-sanger af11-sanger deleted old code af40538
@dparrysmith dparrysmith Added plate copy help 200a93d
@dparrysmith dparrysmith Changed the name of the page for copy to 'plate_from_copy' 5ca834a
@dparrysmith dparrysmith Corrected autocompletion syntax 0d514fd
@af11-sanger af11-sanger bug fix - plate ids stored as plate names 7526ebc
@af11-sanger af11-sanger use hashes to avoid duplicate reporting of wells. code tidy up. f7b33ed
@af11-sanger af11-sanger Merge branch 'devel' into genes_to_ep b531c36
@af11-sanger af11-sanger perlcritic fix cbfb330
@af11-sanger af11-sanger fixed typo in headers which was causing ExtJS updates to fail. ExtJS …
…grid edit now requires double-click
adbabf7
Commits on Feb 21, 2013
@af11-sanger af11-sanger Merge branch 'master' into devel 9a7609a
@af11-sanger af11-sanger v0.052
	GenesToElectroporate report now generated from summaries table
	ExtJS genotyping data update bug fixed
55e1417
@af11-sanger af11-sanger GenesToElectroporate report now generated from summaries table
	ExtJS genotyping data update bug fixed
3854348
@andrewsparkes andrewsparkes changes required to add plate type FINAL_PICK 5032f2b
@dparrysmith dparrysmith Interim commit 5cdc6cf
@andrewsparkes andrewsparkes changed template version to 24, removed audit-up.sql and changed numb…
…er in fixtures.sql
1a15400
@dparrysmith dparrysmith Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into copy_plate 7827ea8
@andrewsparkes andrewsparkes Merge branch 'devel' into final_pick 69e0fa8
@andrewsparkes andrewsparkes Merge branch 'devel' into final_pick 5a6ee1b
Commits on Feb 22, 2013
@pm9-sanger pm9-sanger adds dre to well based on genotype_qc 5247ba2
Commits on Feb 25, 2013
@andrewsparkes andrewsparkes Final pick report and tests in progress f253bab
@andrewsparkes andrewsparkes Final pick tests added b942743
Commits on Feb 26, 2013
@af11-sanger af11-sanger removed some code that is no longer used 59e5129
@dparrysmith dparrysmith Added backend support for plate copy for DNA plates.
Commented out interface changes until complete.
7775d1d
@dparrysmith dparrysmith Merge branch 'devel' of github.com:htgt/LIMS2-WebApp into copy_plate e7dbd06
@dparrysmith dparrysmith Modified role. ca16e0b
@dparrysmith dparrysmith Removed FINAL_PICK from gateway and recombinase processes f45b401
@dparrysmith dparrysmith Merge branch 'devel' 893bff6
@dparrysmith dparrysmith v0.053
    Copy Plate backend added
    Final Pick process and plate type added
43ceb05
@af11-sanger af11-sanger Added new design vectors report - not all filter options implemented yet 587f6c5
Commits on Feb 27, 2013
@af11-sanger af11-sanger added promoter and plate type filters, and count columns 6f9ed46
@af11-sanger af11-sanger added promoter and plate type filters, and count columns 3c8e7d7
@af11-sanger af11-sanger Merge branch 'devel' into vector_reports b18d747
Commits on Feb 28, 2013
@pm9-sanger pm9-sanger corrected genotyping upload and automated dre application c099bc6
@af11-sanger af11-sanger Merge branch 'master' into devel 2d8df83
@af11-sanger af11-sanger v0.054
	Added DesignVectors report
2492fc5
@af11-sanger af11-sanger Added DesignVectors report 430b758
Commits on Mar 01, 2013
@sajp sajp make UCSC_BLAT links point to current mouse assembly 10fb078
@pm9-sanger pm9-sanger Merge branch 'devel' into add_dre_through_qc
Conflicts:
	t/fixtures/10-load-fixture-data.sql
240fbdb
@pm9-sanger pm9-sanger Merge branch 'devel' into add_dre_through_qc 7c1b3b4
Commits on Mar 04, 2013
@pm9-sanger pm9-sanger refactored genotypingQC to pass perlcritic criteria bd16318
@pm9-sanger pm9-sanger Merge branch 'master' into devel 65ccf26
@pm9-sanger pm9-sanger Amended GenotypingQc upload and automated the appending of the dre r…
…ecombination to cre wells based on Puro pass.
ce51c90