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mskcc-vcf2maf-decbf60
oncokb-annotator
shiny
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README.md
run_experiments.sh

README.md

KnowledgeDatabase_RED

Steps to access the Knowledge Database

1. Download current development version from Github to your local RED folder:

git clone https://github.com/huangzhii/KnowledgeDatabase_RED.git

2. Open the project folder:

cd KnowledgeDatabase_RED/shiny/

3. Install essential R packages (this could take several minutes):

bash install_essential.sh

4. Run the application:

bash runapp.sh

A test data user could apply is shiny/www/data/test.vcf.