{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":611885559,"defaultBranch":"main","name":"hra-do-processor","ownerLogin":"hubmapconsortium","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-03-09T18:38:29.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/44688968?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1714763101.0","currentOid":""},"activityList":{"items":[{"before":"47df47d03368334a74f30d0b9dde5d6be8303fca","after":"0392a63dfb65293e551c9349ba013173508427e1","ref":"refs/heads/main","pushedAt":"2024-06-14T13:45:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Add cli to generate the blazegraph db separately","shortMessageHtmlLink":"Add cli to generate the blazegraph db separately"}},{"before":"cc29ecd5accd87f40f09e190a0cc5196666e55b4","after":"47df47d03368334a74f30d0b9dde5d6be8303fca","ref":"refs/heads/main","pushedAt":"2024-06-12T15:29:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Fix normalizeAsctbData","shortMessageHtmlLink":"Fix normalizeAsctbData"}},{"before":"14eadf377ad6ffd08d9ba1e3a1e2b02c3dea661f","after":"cc29ecd5accd87f40f09e190a0cc5196666e55b4","ref":"refs/heads/main","pushedAt":"2024-06-10T13:47:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Added code to generate a compiled JSON of all raw data from ASCT+B tables for a collection (needed for CxG collab)","shortMessageHtmlLink":"Added code to generate a compiled JSON of all raw data from ASCT+B ta…"}},{"before":"c224f55ce8dc9b5ffdc2f5598a2979fd0327b037","after":"14eadf377ad6ffd08d9ba1e3a1e2b02c3dea661f","ref":"refs/heads/main","pushedAt":"2024-06-07T18:49:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Fix schema.org context","shortMessageHtmlLink":"Fix schema.org context"}},{"before":"b934dc8a2f7407cc181ee613f29f04659012ecae","after":"c224f55ce8dc9b5ffdc2f5598a2979fd0327b037","ref":"refs/heads/main","pushedAt":"2024-06-07T13:42:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Process scene nodes starting at the primary node","shortMessageHtmlLink":"Process scene nodes starting at the primary node"}},{"before":"ab827c70f65a406b002cd86e44ada70c57e83850","after":"b934dc8a2f7407cc181ee613f29f04659012ecae","ref":"refs/heads/main","pushedAt":"2024-06-06T16:43:23.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"johardi","name":"Josef Hardi","path":"/johardi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062950?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/hubmapconsortium/hra-do-processor","shortMessageHtmlLink":"Merge branch 'main' of <a href=\"https://github.com/hubmapconsortium/hra-do-processor\">https://github.com/hubmapconsortium/hra-do-pro…</a>"}},{"before":"3ad3dc1734743e939d9c867772eb59fa160eeb24","after":"ab827c70f65a406b002cd86e44ada70c57e83850","ref":"refs/heads/main","pushedAt":"2024-06-06T12:33:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Switch to stable build of linkml-owl","shortMessageHtmlLink":"Switch to stable build of linkml-owl"}},{"before":"ad7ba27ff94e306ef555e125d844ce9f90927d56","after":"3ad3dc1734743e939d9c867772eb59fa160eeb24","ref":"refs/heads/main","pushedAt":"2024-06-05T21:04:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"johardi","name":"Josef Hardi","path":"/johardi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062950?s=80&v=4"},"commit":{"message":"Specify that each slot is an OWL annotation property and assertion\n\nThis is a temporary solution as it may fail if a same field is used by both the metadata object and data instances. For instance, we didn't state that 'title' (in metadata-base.yaml) is an OWL annotation property and assertion because it's used by the metadata object (see normalized.yaml). If a data instance wants to use the 'title' property then we need to add the OWL annotation property and assertion definitions in its schema file. You can see this workaround in the collection-metadata.yaml.","shortMessageHtmlLink":"Specify that each slot is an OWL annotation property and assertion"}},{"before":"0957d2b4f14355fbded17d49fd13c5904e3a9051","after":"ad7ba27ff94e306ef555e125d844ce9f90927d56","ref":"refs/heads/main","pushedAt":"2024-06-04T17:21:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Update crosswalk logic","shortMessageHtmlLink":"Update crosswalk logic"}},{"before":"e3e553446a3d5068fb5635bfea0a0d8449e7598d","after":"0957d2b4f14355fbded17d49fd13c5904e3a9051","ref":"refs/heads/main","pushedAt":"2024-06-04T15:47:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Fallback to basic graph processing when an omap conversion fails either due to error or old format","shortMessageHtmlLink":"Fallback to basic graph processing when an omap conversion fails eith…"}},{"before":"cbca2cb34381bc6e29ea44e18a3b1f582bbdf960","after":"e3e553446a3d5068fb5635bfea0a0d8449e7598d","ref":"refs/heads/main","pushedAt":"2024-06-04T13:49:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Needs more clean up but made sure trims didn't error out on undefined","shortMessageHtmlLink":"Needs more clean up but made sure trims didn't error out on undefined"}},{"before":"1b603e3519860973dcaf877c90db48945eff5d8a","after":"cbca2cb34381bc6e29ea44e18a3b1f582bbdf960","ref":"refs/heads/main","pushedAt":"2024-06-04T13:08:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Update pinned versions","shortMessageHtmlLink":"Update pinned versions"}},{"before":"f85a3f24f26962b4293fc5a0bc67c636da9c98e3","after":"1b603e3519860973dcaf877c90db48945eff5d8a","ref":"refs/heads/main","pushedAt":"2024-06-03T23:59:07.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"johardi","name":"Josef Hardi","path":"/johardi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5062950?s=80&v=4"},"commit":{"message":"Update the instance IRI construction","shortMessageHtmlLink":"Update the instance IRI construction"}},{"before":"7e0eacfbddda21dfed333c865c675f151e1d0dab","after":"f85a3f24f26962b4293fc5a0bc67c636da9c98e3","ref":"refs/heads/main","pushedAt":"2024-05-31T15:44:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Added cli command and code to update individual reference organ crosswalks","shortMessageHtmlLink":"Added cli command and code to update individual reference organ cross…"}},{"before":"84e4950a158757ecc6b9a819dd99e3e8b6936bdd","after":"7e0eacfbddda21dfed333c865c675f151e1d0dab","ref":"refs/heads/main","pushedAt":"2024-05-31T12:29:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Split on comma or semicolon","shortMessageHtmlLink":"Split on comma or semicolon"}},{"before":"408256fe51d494963b888ea89374fb3e4ba549ae","after":"84e4950a158757ecc6b9a819dd99e3e8b6936bdd","ref":"refs/heads/main","pushedAt":"2024-05-31T12:12:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Allow author_orcid or author_orcids column in omaps for backwards compatibility","shortMessageHtmlLink":"Allow author_orcid or author_orcids column in omaps for backwards com…"}},{"before":"99c5f28a12f786aa881f19737187ead31c3ba4a4","after":"408256fe51d494963b888ea89374fb3e4ba549ae","ref":"refs/heads/main","pushedAt":"2024-05-29T14:10:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Added 'update-collection' cli command to update a collection's digital objects to the latest version of each","shortMessageHtmlLink":"Added 'update-collection' cli command to update a collection's digita…"}},{"before":"4dd83612bbb0c9e75ba07d9389868a0298bf52d6","after":"99c5f28a12f786aa881f19737187ead31c3ba4a4","ref":"refs/heads/main","pushedAt":"2024-05-23T19:48:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Update metadata schemas","shortMessageHtmlLink":"Update metadata schemas"}},{"before":"27fef9a22c42bdafefb0bfc15dd0fc3fa536da06","after":"4dd83612bbb0c9e75ba07d9389868a0298bf52d6","ref":"refs/heads/main","pushedAt":"2024-05-23T19:23:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Update metadata generation to set the right dataset id and a few other tweaks","shortMessageHtmlLink":"Update metadata generation to set the right dataset id and a few othe…"}},{"before":"48e654d76e87dd2e655700953592657c3f9325fa","after":"27fef9a22c42bdafefb0bfc15dd0fc3fa536da06","ref":"refs/heads/main","pushedAt":"2024-05-17T13:21:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"extraction_set_for should reference the named graph rather than the #primary node now.","shortMessageHtmlLink":"extraction_set_for should reference the named graph rather than the #…"}},{"before":"ed8f4b789b6eb71b9c06c2a0c47b319e569f2389","after":"48e654d76e87dd2e655700953592657c3f9325fa","ref":"refs/heads/main","pushedAt":"2024-05-15T20:39:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Fix ds-graph enrichment","shortMessageHtmlLink":"Fix ds-graph enrichment"}},{"before":"cf21ef9fc18addc1441c45490185ed6946d9caf9","after":"ed8f4b789b6eb71b9c06c2a0c47b319e569f2389","ref":"refs/heads/main","pushedAt":"2024-05-15T12:54:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Disable ds-graph and process as graph type until it's performance can be improved significantly.","shortMessageHtmlLink":"Disable ds-graph and process as graph type until it's performance can…"}},{"before":"53b79e60358055d88480896a1b27ae403e1d3698","after":"cf21ef9fc18addc1441c45490185ed6946d9caf9","ref":"refs/heads/main","pushedAt":"2024-05-14T12:14:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Update ds graph processing to support hra-pop-full","shortMessageHtmlLink":"Update ds graph processing to support hra-pop-full"}},{"before":"5a42d013440646842d8921ae477c566c83e707d8","after":"53b79e60358055d88480896a1b27ae403e1d3698","ref":"refs/heads/main","pushedAt":"2024-05-13T12:49:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Make rui_location optional for ds-graphs","shortMessageHtmlLink":"Make rui_location optional for ds-graphs"}},{"before":"7e04b636923c7ff3067f3b427ca4638c271a8a63","after":"5a42d013440646842d8921ae477c566c83e707d8","ref":"refs/heads/main","pushedAt":"2024-05-10T15:18:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Fixes for ds-graph and ref organ","shortMessageHtmlLink":"Fixes for ds-graph and ref organ"}},{"before":"0d7dae1d3fe9ae5f4d8c9fa6fc361aa657347001","after":"7e04b636923c7ff3067f3b427ca4638c271a8a63","ref":"refs/heads/main","pushedAt":"2024-05-07T20:26:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Add semsql to requirements.txt","shortMessageHtmlLink":"Add semsql to requirements.txt"}},{"before":"c98ef1a056da0e8162b7a4493a1fb725660e7653","after":"0d7dae1d3fe9ae5f4d8c9fa6fc361aa657347001","ref":"refs/heads/main","pushedAt":"2024-05-07T20:10:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Update package lock","shortMessageHtmlLink":"Update package lock"}},{"before":"3849e812db94b5ce6747b4fc1485dc711098a104","after":null,"ref":"refs/heads/ref-organ-tweaks","pushedAt":"2024-05-03T19:05:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"}},{"before":"19db1ba3f63ed9e240043982a7e9e5da7eb6caad","after":"c98ef1a056da0e8162b7a4493a1fb725660e7653","ref":"refs/heads/main","pushedAt":"2024-05-03T19:04:56.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Add rui rank and normalized reference organ label","shortMessageHtmlLink":"Add rui rank and normalized reference organ label"}},{"before":null,"after":"3849e812db94b5ce6747b4fc1485dc711098a104","ref":"refs/heads/ref-organ-tweaks","pushedAt":"2024-05-03T19:02:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bherr2","name":"Bruce W. Herr II","path":"/bherr2","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34098595?s=80&v=4"},"commit":{"message":"Add rui rank and normalized reference organ label","shortMessageHtmlLink":"Add rui rank and normalized reference organ label"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEZYRrVgA","startCursor":null,"endCursor":null}},"title":"Activity · hubmapconsortium/hra-do-processor"}