From 4dd252882c47ff897ccae6c88c51fec7203b4fdc Mon Sep 17 00:00:00 2001
From: Evan Ray <elray@umass.edu>
Date: Wed, 7 Jun 2023 22:30:50 -0400
Subject: [PATCH] add github action to run R CMD check on PRs

---
 .Rbuildignore                      |  1 +
 .github/.gitignore                 |  1 +
 .github/workflows/R-CMD-check.yaml | 49 ++++++++++++++++++++++++++++++
 README.Rmd                         |  1 +
 4 files changed, 52 insertions(+)
 create mode 100644 .github/.gitignore
 create mode 100644 .github/workflows/R-CMD-check.yaml

diff --git a/.Rbuildignore b/.Rbuildignore
index 3df6db3..3583156 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -3,3 +3,4 @@
 ^LICENSE\.md$
 ^README\.Rmd$
 ^cran-comments\.md$
+^\.github$
diff --git a/.github/.gitignore b/.github/.gitignore
new file mode 100644
index 0000000..2d19fc7
--- /dev/null
+++ b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
new file mode 100644
index 0000000..a3ac618
--- /dev/null
+++ b/.github/workflows/R-CMD-check.yaml
@@ -0,0 +1,49 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
diff --git a/README.Rmd b/README.Rmd
index 8585d24..8b739a8 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -18,6 +18,7 @@ knitr::opts_chunk$set(
 <!-- badges: start -->
 [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
 [![CRAN status](https://www.r-pkg.org/badges/version/hubEnsembles)](https://CRAN.R-project.org/package=hubEnsembles)
+[![R-CMD-check](https://github.com/Infectious-Disease-Modeling-Hubs/hubEnsembles/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/Infectious-Disease-Modeling-Hubs/hubEnsembles/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 The goal of hubEnsembles is to ...