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Planet Microbe - Semantic search across ‘omics, environmental, and physiochemical data layers.
Planet Microbe scripts and examples
434/534 Biosystems Analytics course at the University of Arizona
Data packages for the Planet Microbe project
Static HTML/CSS for iMicrobe landing page
A CyVerse pipeline for clustering 16S rDNA data.
Pipeline for assembly of metagenomes and retrieval of viral contigs
Stampede implementation of MEGAHIT
Run Centrifuge on Stampede
Biocontainer Trim Galore for Stampede2
B2 Web Interface (back/frontend)
Template for creating pipelines on TACC stampede cluster.
Run fastq-dump on Stampede2
Stampede app for creating bubble plots from Centrifuge TSV files
Sequence similarity plots in D3
Node app server for iMicrobe data
Containers, workflows, etc.