@hurwitzlab

Hurwitz Lab

Repository of the lab of Bonnie Hurwitz (UA)

  • Elm 3 1 MIT Updated Sep 24, 2018
  • A CyVerse pipeline for clustering 16S rDNA data.

    Python 1 MIT Updated Sep 21, 2018
  • Run fastq-dump on Stampede2

    Shell Updated Sep 21, 2018
  • Hadoop job service

    JavaScript MIT Updated Sep 18, 2018
  • Sequence similarity plots in D3

    JavaScript MIT Updated Sep 13, 2018
  • Node app server for iMicrobe data

    JavaScript 1 2 MIT Updated Sep 7, 2018
  • General purpose scripts and libraries for iMicrobe.

    Perl 1 GPL-3.0 Updated Aug 31, 2018
  • R 1 GPL-3.0 Updated Aug 30, 2018
  • Demo search for Planet Microbe

    Elm MIT Updated Aug 30, 2018
  • Vsearch Singularity container for Stampede

    Rust MIT Updated Aug 30, 2018
  • Publish projects to EBI and NCBI

    JavaScript MIT Updated Aug 23, 2018
  • Rust program to count kmer frequencies in each sequence

    Rust MIT Updated Aug 22, 2018
  • Run GBME

    R MIT Updated Aug 16, 2018
  • Stampede app for creating bubble plots from Centrifuge TSV files

    R Updated Aug 13, 2018
  • Run Centrifuge on Stampede

    Python 1 GPL-3.0 Updated Aug 13, 2018
  • Mojolicious for muSCOPE

    Perl MIT Updated Aug 2, 2018
  • Libraries, data models, scripts for muSCOPE

    Perl GPL-3.0 Updated Aug 2, 2018
  • Stampede2/TACC metaspades app

    MIT Updated Jul 31, 2018
  • Use Centrifuge calls to filter sequence (FASTA) into accepted/rejected

    Python Updated Jul 6, 2018
  • All-vs-all sequence comparison for WGS

    R 1 2 Updated Jul 6, 2018
  • Singularity container for COMMET

    Python MIT Updated Jul 5, 2018
  • Shell GPL-3.0 Updated Jul 5, 2018
  • A CyVerse app implementing "Microbial eukaryotic 18S tag-sequence processing/QC - V4 region" from protocols.io.

    Python MIT Updated Jul 5, 2018
  • Determines bacterial genomes from DNA reads then shows gene expression differences from RNA reads

    Python GPL-3.0 Updated Jun 29, 2018
  • Singularity R image for Rlda

    Makefile MIT Updated Jun 29, 2018
  • Scripts to load UProC results into the iMicrobe database.

    Python MIT Updated Jun 28, 2018
  • Deep learning demonstration code.

    Python 1 MIT Updated Jun 28, 2018
  • Automated tests for the iMicrobe website.

    Python MIT Updated Jun 28, 2018
  • A CyVerse app to run Prokka.

    Makefile MIT Updated Jun 28, 2018
  • A CyVerse app for running the MegaHit assembler.

    Python MIT Updated Jun 28, 2018