mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/write_integral_to_post.o NETCDF_IO/write_integral_to_post.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/package_field.o NETCDF_IO/package_field.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/initialize_postprocess_file.o NETCDF_IO/initialize_postprocess_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/add_var_to_file.o NETCDF_IO/add_var_to_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/nc_err.o NETCDF_IO/nc_err.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/read_mask_from_file.o NETCDF_IO/read_mask_from_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/check_file_existence.o NETCDF_IO/check_file_existence.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/write_regions_to_post.o NETCDF_IO/write_regions_to_post.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/initialize_regions_file.o NETCDF_IO/initialize_regions_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/initialize_particle_file.o NETCDF_IO/initialize_particle_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/write_time_average_to_post.o NETCDF_IO/write_time_average_to_post.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/write_field_to_output.o NETCDF_IO/write_field_to_output.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/read_var_from_file.o NETCDF_IO/read_var_from_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/add_attr_to_file.o NETCDF_IO/add_attr_to_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/initialize_projected_particle_file.o NETCDF_IO/initialize_projected_particle_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/load_region_definitions.o NETCDF_IO/load_region_definitions.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/initialize_output_file.o NETCDF_IO/initialize_output_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/read_attr_from_file.o NETCDF_IO/read_attr_from_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o NETCDF_IO/initialize_subset_file.o NETCDF_IO/initialize_subset_file.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_vorticity.o Functions/compute_vorticity.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_spatial_average.o Functions/compute_spatial_average.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/equation_of_state.o Functions/equation_of_state.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_vorticity_at_point.o Functions/compute_vorticity_at_point.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/vel_Cart_to_Spher_at_point.o Functions/vel_Cart_to_Spher_at_point.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_Z.o Functions/compute_Z.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/extend_mask_to_poles.o Functions/extend_mask_to_poles.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/vel_Cart_to_Spher.o Functions/vel_Cart_to_Spher.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/distance.o Functions/distance.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_local_kernel.o Functions/compute_local_kernel.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/kernel_alpha.o Functions/kernel_alpha.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/get_omp_chunksize.o Functions/get_omp_chunksize.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/roll_field.o Functions/roll_field.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/extend_latitude_to_poles.o Functions/extend_latitude_to_poles.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_Pi.o Functions/compute_Pi.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/KE_from_vels.o Functions/KE_from_vels.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_areas.o Functions/compute_areas.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/vel_Spher_to_Cart_at_point.o Functions/vel_Spher_to_Cart_at_point.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/get_lon_bounds.o Functions/get_lon_bounds.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/get_lat_bounds.o Functions/get_lat_bounds.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/apply_filter_at_point_for_quadratics.o Functions/apply_filter_at_point_for_quadratics.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/depotential_temperature.o Functions/depotential_temperature.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Index1to4.o Functions/Index1to4.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_Pi_shift_deriv.o Functions/compute_Pi_shift_deriv.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/extend_field_to_poles.o Functions/extend_field_to_poles.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/convert_coordinates.o Functions/convert_coordinates.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/apply_filter_at_point.o Functions/apply_filter_at_point.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/mask_out_pole.o Functions/mask_out_pole.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/kernel.o Functions/kernel.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/dataset_class.o Functions/dataset_class.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Index.o Functions/Index.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_Pi_Helmholtz.o Functions/compute_Pi_Helmholtz.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/vel_Spher_to_Cart.o Functions/vel_Spher_to_Cart.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/timing_records.o Functions/timing_records.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/filtering.o Functions/filtering.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/compute_div_transport.o Functions/compute_div_transport.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Differentiation_Tools/Cart_derivs_at_point.o Functions/Differentiation_Tools/Cart_derivs_at_point.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Differentiation_Tools/non_uniform_diff_vector.o Functions/Differentiation_Tools/non_uniform_diff_vector.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Differentiation_Tools/differentiation_vector.o Functions/Differentiation_Tools/differentiation_vector.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Differentiation_Tools/get_diff_vector.o Functions/Differentiation_Tools/get_diff_vector.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Differentiation_Tools/spher_derivative_at_point.o Functions/Differentiation_Tools/spher_derivative_at_point.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/write_zonal_avg_and_std.o Postprocess/write_zonal_avg_and_std.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/write_region_avg_and_std.o Postprocess/write_region_avg_and_std.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/compute_time_avg_std.o Postprocess/compute_time_avg_std.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/define_regions.o Postprocess/define_regions.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/write_region_avg_and_std_OkuboWeiss.o Postprocess/write_region_avg_and_std_OkuboWeiss.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/compute_zonal_avg_and_std.o Postprocess/compute_zonal_avg_and_std.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/Apply_Postprocess_Routines.o Postprocess/Apply_Postprocess_Routines.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/write_regions.o Postprocess/write_regions.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/compute_region_avg_and_std.o Postprocess/compute_region_avg_and_std.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/compute_region_avg_and_std_OkuboWeiss.o Postprocess/compute_region_avg_and_std_OkuboWeiss.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Postprocess/compute_region_areas.o Postprocess/compute_region_areas.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Particles/particles_initial_positions.o Functions/Particles/particles_initial_positions.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Particles/particles_evolve_trajectories.o Functions/Particles/particles_evolve_trajectories.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Particles/particles_fore_back_difference.o Functions/Particles/particles_fore_back_difference.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Particles/particles_project_onto_trajectory.o Functions/Particles/particles_project_onto_trajectory.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Particles/particles_interp_from_edges.o Functions/Particles/particles_interp_from_edges.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Particles/particles_get_edges.o Functions/Particles/particles_get_edges.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx -DMAJOR_VERSION=3 -DMINOR_VERSION=1 -DPATCH_VERSION=1 -DGIT_VERSION=\""heads/master-0-gf4753fb-dirty"\" `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Interface_Tools/print_header_info.o Functions/Interface_Tools/print_header_info.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx -DMAJOR_VERSION=3 -DMINOR_VERSION=1 -DPATCH_VERSION=1 -DGIT_VERSION=\""heads/master-0-gf4753fb-dirty"\" `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Interface_Tools/print_compile_info.o Functions/Interface_Tools/print_compile_info.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx -DMAJOR_VERSION=3 -DMINOR_VERSION=1 -DPATCH_VERSION=1 -DGIT_VERSION=\""heads/master-0-gf4753fb-dirty"\" `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Interface_Tools/string_to_bool.o Functions/Interface_Tools/string_to_bool.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx -DMAJOR_VERSION=3 -DMINOR_VERSION=1 -DPATCH_VERSION=1 -DGIT_VERSION=\""heads/master-0-gf4753fb-dirty"\" `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Functions/Interface_Tools/InputParser.o Functions/Interface_Tools/InputParser.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx -DMAJOR_VERSION=3 -DMINOR_VERSION=1 -DPATCH_VERSION=1 -DGIT_VERSION=\""heads/master-0-gf4753fb-dirty"\" `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -c -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib -o Case_Files/coarse_grain.o Case_Files/coarse_grain.cpp -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 mpicxx -DMAJOR_VERSION=3 -DMINOR_VERSION=1 -DPATCH_VERSION=1 -DGIT_VERSION=\""heads/master-0-gf4753fb-dirty"\" -DDEBUG=0 -Wall -std=c++14 -O3 `nc-config --cxx4libs` -L/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/lib -L/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib `nc-config --cxx4flags` -I/network/software/ubuntu_bionic/netcdf/netcdf-c-4.9.0-parallel/include -I/network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/include -o Case_Files/coarse_grain.x NETCDF_IO/write_integral_to_post.o NETCDF_IO/package_field.o NETCDF_IO/initialize_postprocess_file.o NETCDF_IO/add_var_to_file.o NETCDF_IO/nc_err.o NETCDF_IO/read_mask_from_file.o NETCDF_IO/check_file_existence.o NETCDF_IO/write_regions_to_post.o NETCDF_IO/initialize_regions_file.o NETCDF_IO/initialize_particle_file.o NETCDF_IO/write_time_average_to_post.o NETCDF_IO/write_field_to_output.o NETCDF_IO/read_var_from_file.o NETCDF_IO/add_attr_to_file.o NETCDF_IO/initialize_projected_particle_file.o NETCDF_IO/load_region_definitions.o NETCDF_IO/initialize_output_file.o NETCDF_IO/read_attr_from_file.o NETCDF_IO/initialize_subset_file.o Functions/compute_vorticity.o Functions/compute_spatial_average.o Functions/equation_of_state.o Functions/compute_vorticity_at_point.o Functions/vel_Cart_to_Spher_at_point.o Functions/compute_Z.o Functions/extend_mask_to_poles.o Functions/vel_Cart_to_Spher.o Functions/distance.o Functions/compute_local_kernel.o Functions/kernel_alpha.o Functions/get_omp_chunksize.o Functions/roll_field.o Functions/extend_latitude_to_poles.o Functions/compute_Pi.o Functions/KE_from_vels.o Functions/compute_areas.o Functions/vel_Spher_to_Cart_at_point.o Functions/get_lon_bounds.o Functions/get_lat_bounds.o Functions/apply_filter_at_point_for_quadratics.o Functions/depotential_temperature.o Functions/Index1to4.o Functions/compute_Pi_shift_deriv.o Functions/extend_field_to_poles.o Functions/convert_coordinates.o Functions/apply_filter_at_point.o Functions/mask_out_pole.o Functions/kernel.o Functions/dataset_class.o Functions/Index.o Functions/compute_Pi_Helmholtz.o Functions/vel_Spher_to_Cart.o Functions/timing_records.o Functions/filtering.o Functions/compute_div_transport.o Functions/Differentiation_Tools/Cart_derivs_at_point.o Functions/Differentiation_Tools/non_uniform_diff_vector.o Functions/Differentiation_Tools/differentiation_vector.o Functions/Differentiation_Tools/get_diff_vector.o Functions/Differentiation_Tools/spher_derivative_at_point.o Postprocess/write_zonal_avg_and_std.o Postprocess/write_region_avg_and_std.o Postprocess/compute_time_avg_std.o Postprocess/define_regions.o Postprocess/write_region_avg_and_std_OkuboWeiss.o Postprocess/compute_zonal_avg_and_std.o Postprocess/Apply_Postprocess_Routines.o Postprocess/write_regions.o Postprocess/compute_region_avg_and_std.o Postprocess/compute_region_avg_and_std_OkuboWeiss.o Postprocess/compute_region_areas.o Functions/Particles/particles_initial_positions.o Functions/Particles/particles_evolve_trajectories.o Functions/Particles/particles_fore_back_difference.o Functions/Particles/particles_project_onto_trajectory.o Functions/Particles/particles_interp_from_edges.o Functions/Particles/particles_get_edges.o Functions/Interface_Tools/print_header_info.o Functions/Interface_Tools/print_compile_info.o Functions/Interface_Tools/string_to_bool.o Functions/Interface_Tools/InputParser.o Case_Files/coarse_grain.o -lnetcdf -lhdf5_hl -lhdf5 -lz -lcurl -fopenmp -lm -lsz -lbz2 -lxml2 icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported icpc: command line warning #10148: option '-Wdate-time' not supported ld: warning: libmpi.so.40, needed by /network/software/ubuntu_bionic/hdf5/1.12.2-intel-parallel/lib/libhdf5_hl.so, may conflict with libmpi.so.20