diff --git a/INSTALL.txt b/INSTALL.txt old mode 100755 new mode 100644 diff --git a/doc/Makefile b/doc/Makefile old mode 100755 new mode 100644 diff --git a/doc/_static/copybutton.js b/doc/_static/copybutton.js old mode 100755 new mode 100644 diff --git a/doc/conf.py b/doc/conf.py old mode 100755 new mode 100644 diff --git a/doc/index.rst b/doc/index.rst old mode 100755 new mode 100644 diff --git a/hyperspy/__init__.py b/hyperspy/__init__.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/bleasdale.py b/hyperspy/_components/bleasdale.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/eels_cl_edge.py b/hyperspy/_components/eels_cl_edge.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/eels_double_power_law.py b/hyperspy/_components/eels_double_power_law.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/eels_vignetting.py b/hyperspy/_components/eels_vignetting.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/error_function.py b/hyperspy/_components/error_function.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/exponential.py b/hyperspy/_components/exponential.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/gaussian.py b/hyperspy/_components/gaussian.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/heaviside.py b/hyperspy/_components/heaviside.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/logistic.py b/hyperspy/_components/logistic.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/lorentzian.py b/hyperspy/_components/lorentzian.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/offset.py b/hyperspy/_components/offset.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/pes_core_line_shape.py b/hyperspy/_components/pes_core_line_shape.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/pes_see.py b/hyperspy/_components/pes_see.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/power_law.py b/hyperspy/_components/power_law.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/rc.py b/hyperspy/_components/rc.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/scalable_fixed_pattern.py b/hyperspy/_components/scalable_fixed_pattern.py old mode 100755 new mode 100644 diff --git a/hyperspy/_components/voigt.py b/hyperspy/_components/voigt.py old mode 100755 new mode 100644 diff --git a/hyperspy/component.py b/hyperspy/component.py old mode 100755 new mode 100644 diff --git a/hyperspy/components1d.py b/hyperspy/components1d.py old mode 100755 new mode 100644 diff --git a/hyperspy/defaults_parser.py b/hyperspy/defaults_parser.py old mode 100755 new mode 100644 diff --git a/hyperspy/drawing/widgets.py b/hyperspy/drawing/widgets.py old mode 100755 new mode 100644 diff --git a/hyperspy/io_plugins/README b/hyperspy/io_plugins/README old mode 100755 new mode 100644 diff --git a/hyperspy/io_plugins/__init__.py b/hyperspy/io_plugins/__init__.py old mode 100755 new mode 100644 diff --git a/hyperspy/io_plugins/image.py b/hyperspy/io_plugins/image.py old mode 100755 new mode 100644 diff --git a/hyperspy/io_plugins/mrc.py b/hyperspy/io_plugins/mrc.py old mode 100755 new mode 100644 diff --git a/hyperspy/io_plugins/netcdf.py b/hyperspy/io_plugins/netcdf.py old mode 100755 new mode 100644 diff --git a/hyperspy/misc/config_dir.py b/hyperspy/misc/config_dir.py old mode 100755 new mode 100644 diff --git a/hyperspy/misc/ipython_tools.py b/hyperspy/misc/ipython_tools.py old mode 100755 new mode 100644 diff --git a/hyperspy/model.py b/hyperspy/model.py old mode 100755 new mode 100644 diff --git a/hyperspy/models/model1d.py b/hyperspy/models/model1d.py old mode 100755 new mode 100644 diff --git a/hyperspy/models/model2d.py b/hyperspy/models/model2d.py old mode 100755 new mode 100644 diff --git a/hyperspy/tests/io/protochips_data/invalid_protochips_file.csv b/hyperspy/tests/io/protochips_data/invalid_protochips_file.csv old mode 100755 new mode 100644 diff --git a/hyperspy/tests/io/protochips_data/protochips_electrical.csv b/hyperspy/tests/io/protochips_data/protochips_electrical.csv old mode 100755 new mode 100644 diff --git a/hyperspy/tests/io/protochips_data/protochips_electrothermal.csv b/hyperspy/tests/io/protochips_data/protochips_electrothermal.csv old mode 100755 new mode 100644 diff --git a/hyperspy/tests/io/protochips_data/protochips_thermal.csv b/hyperspy/tests/io/protochips_data/protochips_thermal.csv old mode 100755 new mode 100644 diff --git a/hyperspy/tests/io/protochips_data/random_csv_file.csv b/hyperspy/tests/io/protochips_data/random_csv_file.csv old mode 100755 new mode 100644 diff --git a/hyperspy/tests/io/tiff_files/FEI-Helios-Ebeam-16bits.tif b/hyperspy/tests/io/tiff_files/FEI-Helios-Ebeam-16bits.tif old mode 100755 new mode 100644 diff --git a/hyperspy/tests/io/tiff_files/FEI-Helios-Ebeam-8bits.tif b/hyperspy/tests/io/tiff_files/FEI-Helios-Ebeam-8bits.tif old mode 100755 new mode 100644 diff --git a/hyperspy/tests/io/tiff_files/test_loading_image_saved_with_imageJ.tif b/hyperspy/tests/io/tiff_files/test_loading_image_saved_with_imageJ.tif old mode 100755 new mode 100644 diff --git a/stdeb.cfg b/stdeb.cfg old mode 100755 new mode 100644