Burrow-Wheeler Aligner
C Perl Objective-C C++
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bwt_gen
.gitignore
COPYING
ChangeLog
Makefile
NEWS
README
bamlite.c
bamlite.h
bntseq.c
bntseq.h
bwa.1
bwape.c
bwase.c
bwase.h
bwaseqio.c
bwt.c
bwt.h
bwt_lite.c
bwt_lite.h
bwtaln.c
bwtaln.h
bwtgap.c
bwtgap.h
bwtindex.c
bwtio.c
bwtmisc.c
bwtsw2.h
bwtsw2_aux.c
bwtsw2_chain.c
bwtsw2_core.c
bwtsw2_main.c
cs2nt.c
is.c
khash.h
kseq.h
ksort.h
kstring.c
kstring.h
kvec.h
main.c
main.h
qualfa2fq.pl
simple_dp.c
solid2fastq.pl
stdaln.c
stdaln.h
utils.c
utils.h
xa2multi.pl

README

Released packages can be downloaded from SourceForge.net:

  http://sourceforge.net/projects/bio-bwa/files/

Introduction and FAQ are available at:

  http://bio-bwa.sourceforge.net

Manual page at:

  http://bio-bwa.sourceforge.net/bwa.shtml

Mailing list:

  bio-bwa-help@lists.sourceforge.net

To sign up:

  http://sourceforge.net/mail/?group_id=276243

Publications (Open Access):

  http://www.ncbi.nlm.nih.gov/pubmed/20080505
  http://www.ncbi.nlm.nih.gov/pubmed/19451168

Incomplete list of citations (via HubMed.org):

  http://www.hubmed.org/references.cgi?uids=20080505
  http://www.hubmed.org/references.cgi?uids=19451168