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Commits on May 22, 2017
  1. remove case from the equation

    committed May 22, 2017
  2. unique column finder

    committed May 22, 2017
Commits on May 14, 2017
Commits on May 5, 2017
  1. more control on VCF to fasta results -- allow a ref strain to be part…

    … of the reseq so can rely on those alleles over the ref genome assembly calls
    committed May 5, 2017
Commits on Apr 10, 2017
Commits on Mar 9, 2017
Commits on Jan 11, 2017
  1. does not work anymore

    committed Jan 11, 2017
Commits on Nov 15, 2016
Commits on Jul 27, 2016
  1. fasta alignment - works best for haploids and drops singletons with l…

    …ow coverage in most strains (>80% uncovered for a region)
    committed Jul 27, 2016
Commits on Nov 19, 2015
  1. plot snps across chroms

    committed Nov 19, 2015
  2. super simple gff3 from vcf

    committed Nov 19, 2015
Commits on Jul 22, 2015
Commits on May 31, 2015
  1. rename SRA acc to strain IDs

    committed May 31, 2015
Commits on Apr 29, 2015
Commits on Oct 30, 2014
  1. u1a10 prediction

    committed Oct 30, 2014
Commits on Jul 16, 2014
Commits on Jul 10, 2014
  1. do normalization

    committed Jul 10, 2014
  2. cluster script

    committed Jul 10, 2014
  3. don't do unncessary dump

    committed Jul 10, 2014
  4. minor tweaks

    committed Jul 10, 2014
  5. fix legend

    committed Jul 10, 2014
  6. allow a few other name

    committed Jul 10, 2014
Commits on Apr 1, 2014
  1. warnings on

    committed Apr 1, 2014
  2. add GC count tool

    committed Apr 1, 2014
Commits on Feb 2, 2014
  1. some more cmdline options

    committed Feb 2, 2014