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Commits on Aug 2, 2012
  1. Richard Easty
  2. Richard Easty
Commits on Jul 25, 2012
  1. Richard Easty

    initial commit

    rme451 authored
Commits on Jun 28, 2012
  1. Richard Easty

    tidy

    rme451 authored
  2. Richard Easty
Commits on Jun 21, 2012
  1. Richard Easty

    initial changes

    rme451 authored
Commits on Mar 16, 2012
  1. Richard Easty

    remove commented code

    rme451 authored
  2. Richard Easty
Commits on Nov 23, 2011
  1. Darren Oakley
  2. Darren Oakley

    wtsi-phenotyping-param_level_heatmap custom_sort optimisation - call …

    dazoakley authored
    …the mp_heatmap_config method once as it's expensive.
  3. Darren Oakley
Commits on Nov 11, 2011
  1. Darren Oakley

    * Update some css rules for the data download links on WTSI data.

    dazoakley authored
    * Bump the server version no so the css takes effect on next release.
  2. Darren Oakley
  3. Darren Oakley
Commits on Nov 10, 2011
  1. Darren Oakley
  2. Darren Oakley

    remove tabs

    dazoakley authored
  3. Darren Oakley
  4. Darren Oakley
  5. holroyd

    Merge branch 'mgp' of https://github.com/i-dcc/martsearch into mgp

    holroyd authored
    Conflicts:
    	config/datasources.json
  6. holroyd

    Fixed showing data points

    holroyd authored
  7. David Richardson
Commits on Nov 9, 2011
  1. Darren Oakley

    Merge branch 'master' into mgp

    dazoakley authored
    * master: (21 commits)
      Added in a rake task for refreshing/populating the OLS cache
      Update the deployment to remove the ols_database stuff and include the new ols_cache code.
      Test fix - the data has changed
      Add a test or two in for the new eurexpress route.
      Fix for the GO test.
      Bump ols to v0.3.2 - bugfixes ahoy!
      Refactor the Eurexpress EMAP tree data gathering to be a touch easier to understand and work with.
      bugfix - no need to focus the EMAP graphs.
      When working with the GO graphs, we're only interested in the parentage from the annotated terms.
      Focus the EMAP graphs so we're working with smaller datasets.
      no need to ignore the ols_database.yml file anymore - get rid of it
      small code clean
      Completley remove the old ontology handling code.
      * Update the ensembl-mouse-go dataset to use the OLS gem * Update the gene-details dataview to follow these changes
      Remove the old prepare ontology cache script
      Remove rubytree and comment out sequel from the Gemfile - sequel is only needed for a short while longer...
      Update OLS to 0.2.1 (fixes a bunch of warnings)
      Clean up the Eurexpress DataSet/DataView and switch it to using the new OLS gem.
      Remove the use of the in memory @ontology_cache from index_builder - the new OLS gem is fast enough to no longer need this.
      Switch out the old MartSearch::OntologyCache to use the new OLS gem in the index building processes.
      ...
    
    Conflicts:
    	Gemfile.lock
  2. Darren Oakley
  3. Darren Oakley
  4. Darren Oakley

    Merge branch 'master' into ols

    dazoakley authored
    * master:
      change the test name munging to ensure a match with the internal name of the biomart attributes
      removed the order link for all mirKO vectors
  5. Darren Oakley

    Refactor the Eurexpress EMAP tree data gathering to be a touch easier…

    dazoakley authored
    … to understand and work with.
  6. Darren Oakley

    Merge branch 'master' into mgp

    dazoakley authored
    * master: (21 commits)
      change the test name munging to ensure a match with the internal name of the biomart attributes
      removed the order link for all mirKO vectors
      Remove the use of NewRelic RPM.
      Roll back the mongo and bson gems...
      Key the MGP heatmap indexing by marker symbol - this should stop colonies going missing if the data hasn't found its way into iMits for some reason.
      Update the dependent gems to latest releases (bundle update).
      Switch the wtsi-phenotyping datasource to the production wtsi mart.
      Rename the last two .erubis templates to .erb
      Update sinatra to 1.3.1 * the erubis function is depricated, so switched to use erb (recommended action) * renamed all .erbuis templates to .erb
      Yet more debug output...
      Add in a lot more debugging statements.
      update rack to 1.3.5
      Remove the code to redirect MS::Controller.logger to a file - un-needed.
      Allow the MS::Controller logger to redirect to a file.
      Put the logger stuff back in - it wasn't the issue
      Comment out logger stuff - see if this is the cause of the respawn problems...
      Remove a now invalid test for the biomart data_origin_url length.
      * Added in a Logger object to the MartSearch::Controller class * Added a ****-tonne of debug messages throughout the system * Removed a potential infinite loop when constructing the data_origin_url on biomart backed data sources. closes #4789
      Change the GO Ontology test to a better example.
      Correct the colony_prefix attribute name
      ...
    
    Conflicts:
    	Gemfile.lock
    	config/datasources.json
    	lib/martsearch/server/views/dataviews/wtsi-phenotyping/_test_details_protocol_graphs.erb
  7. David Richardson
Commits on Nov 8, 2011
  1. Darren Oakley
  2. Darren Oakley

    When working with the GO graphs, we're only interested in the parenta…

    dazoakley authored
    …ge from the annotated terms.
  3. Darren Oakley
  4. Vivek Iyer
Commits on Nov 7, 2011
  1. Darren Oakley

    small code clean

    dazoakley authored
  2. Darren Oakley

    * Update the ensembl-mouse-go dataset to use the OLS gem

    dazoakley authored
    * Update the gene-details dataview to follow these changes
  3. Darren Oakley
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