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Commits on Feb 18, 2011
  1. Merge branch 'master' into wtsi_portal

    * master:
      Updates to the ontology browser builder. closes #4296
    Daz Oakley committed Feb 18, 2011
  2. Updates to the ontology browser builder. closes #4296

    Daz Oakley committed Feb 18, 2011
  3. Added in an MA ontology browser. refs #4296

    Daz Oakley committed Feb 18, 2011
  4. Merge branch 'master' into wtsi_portal

    * master:
      Re-order the browse controls - put chromosome above marker symbol as it's a touch more useful...
      Updated the browse controls so that we can put child ontology terms into the browse controls. refs #4296
    Daz Oakley committed Feb 18, 2011
  5. Re-order the browse controls - put chromosome above marker symbol as …

    …it's a touch more useful...
    Daz Oakley committed Feb 18, 2011
  6. Updated the browse controls so that we can put child ontology terms i…

    …nto the browse controls. refs #4296
    Daz Oakley committed Feb 18, 2011
  7. Merge branch 'master' into wtsi_portal

    * master:
      Bugfix - the overly long protocol descriptions were breaking the JSON/BSON encoder/decoder when used as a key.  This meant that the data wasn't getting cached correctly.  Now we use an MD5 hash of the description for the key.
    Daz Oakley committed Feb 18, 2011
  8. Bugfix - the overly long protocol descriptions were breaking the JSON…

    …/BSON encoder/decoder when used as a key. This meant that the data wasn't getting cached correctly. Now we use an MD5 hash of the description for the key.
    Daz Oakley committed Feb 18, 2011
  9. Merge branch 'master' into wtsi_portal

    * master:
      Added the wtsi-bacs dataset to the index builder config.
    
    Conflicts:
    	config/index_builder/index_builder.json
    Daz Oakley committed Feb 18, 2011
  10. Merge branch 'master' into wtsi_portal

    * master:
      Bugfix - when grouping together terms to index we weren't passing through the Biomart::Dataset object so the display_name of the attribute was not getting indexed correctly.
      Try and clean up the index config file
      Update the biomart gem to 0.2.2 - (0.2.1 was buggy)
    Daz Oakley committed Feb 18, 2011
  11. Bugfix - when grouping together terms to index we weren't passing thr…

    …ough the Biomart::Dataset object so the display_name of the attribute was not getting indexed correctly.
    Daz Oakley committed Feb 18, 2011
  12. Try and clean up the index config file

    Daz Oakley committed Feb 18, 2011
  13. Update the biomart gem to 0.2.2 - (0.2.1 was buggy)

    Daz Oakley committed Feb 18, 2011
  14. Make MongoDB the cache backend

    Daz Oakley committed Feb 18, 2011
Commits on Feb 17, 2011
  1. removed datasets that we don't want to index

    Daz Oakley committed Feb 17, 2011
  2. Merge branch 'master' into wtsi_portal

    * master: (36 commits)
      Bugfix for the WTSI pheno tests.
      Cleaning some of the custom sorts to remove complexities and duplication.
      Extend the wtsi-pheno testing.
      Fix to make the test coverage reporting work.
      Bugfix - the publish_graph custom sort re-work I did yesterday introduced a couple of problems for non-MGP images/reports.
      Cover more of the codebase with metric_fu.
      Forgot to hit save on the last change... :(
      Small code cleanup for the mgp_graphs data sort.
      Updated the MGP pheno data sorts to group the images (on the detailed report pages) by the protocol description as there can be multiple protocols used per heatmap group. closes #4389
      Update the biomart gem to the latest version.
      Updated the MGP spreadsheet generator to cope with the new 'Test abandoned' status. closes #4257
      Updated the heatmap css to include a grey strike-through for an abandoned test. refs #4257
      Updates to the MGP Pheno heatmap legend. refs #4257
      Small change to stop warnings being fired.
      Rename the image templates so they better reflect their new purpose. refs #4258
      First cut display for the skin screen test reports. refs #4258
      Semantic updates to some CSS class names. refs #4258
      Update the .gitignore file to ignore artefacts from the test suite.
      Modified the WTSI MGP dataset grabs to also get skin-screen data. refs #4258
      Disable the mutagenesis prediction software for Regeneron and mirKO projects until it's set-up to deal with them.
      ...
    Daz Oakley committed Feb 17, 2011
  3. Bugfix for the WTSI pheno tests.

    Daz Oakley committed Feb 17, 2011
  4. Cleaning some of the custom sorts to remove complexities and duplicat…

    …ion.
    Daz Oakley committed Feb 17, 2011
  5. Extend the wtsi-pheno testing.

    Daz Oakley committed Feb 17, 2011
  6. Fix to make the test coverage reporting work.

    Daz Oakley committed Feb 17, 2011
  7. Bugfix - the publish_graph custom sort re-work I did yesterday introd…

    …uced a couple of problems for non-MGP images/reports.
    Daz Oakley committed Feb 17, 2011
Commits on Feb 16, 2011
  1. Cover more of the codebase with metric_fu.

    Daz Oakley committed Feb 16, 2011
  2. Forgot to hit save on the last change... :(

    Daz Oakley committed Feb 16, 2011
  3. Small code cleanup for the mgp_graphs data sort.

    Daz Oakley committed Feb 16, 2011
  4. Updated the MGP pheno data sorts to group the images (on the detailed…

    … report pages) by the protocol description as there can be multiple protocols used per heatmap group. closes #4389
    Daz Oakley committed Feb 16, 2011
  5. Update the biomart gem to the latest version.

    Daz Oakley committed Feb 16, 2011
  6. Updated the MGP spreadsheet generator to cope with the new 'Test aban…

    …doned' status. closes #4257
    Daz Oakley committed Feb 16, 2011
  7. Updated the heatmap css to include a grey strike-through for an aband…

    …oned test. refs #4257
    Daz Oakley committed Feb 16, 2011
Commits on Feb 15, 2011
  1. Updates to the MGP Pheno heatmap legend. refs #4257

    Daz Oakley committed Feb 15, 2011
  2. Small change to stop warnings being fired.

    Daz Oakley committed Feb 15, 2011
  3. Rename the image templates so they better reflect their new purpose. …

    …refs #4258
    Daz Oakley committed Feb 15, 2011
  4. Semantic updates to some CSS class names. refs #4258

    Daz Oakley committed Feb 15, 2011