xmipp_transform_add_noise and aligned particles

[rmarabini]

hi,

The protocol xmippAddNoiseParticles is inconsistent when using as input aligned particles.

xmippAddNoiseParticles read the particle and if there is a transformation matrix it applies the in-plane rotation before saving the new image. Finally, the protocol assigns to the new image the same transformation matrix than had the input image. The correct way to do this would be either

1. Do NOT apply the inplane rotation to the new image and store the input image transformation (my favorite solution)
2. Apply the in-plane rotation and store a modified transformation matrix. This matrix would be the product of the original transformation matrix by the inverse of the matrix created by euler angles (0,0,injplanerotation)

[DStrelak]

I would also go for 1.

[cossorzano]

It does not behave like this anymore. It was already solved.