i-Vis at Bilkent

Repositories

• newt

  A web application to visualize and edit pathway models

  visualization editor bioinformatics biology layout systems-biology pathways
  JavaScript LGPL-3.0 19 42 46 0 Updated May 10, 2021

• chise.js

  A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

  editor bioinformatics biology systems-biology pathways network-visualization pathway-analysis
  JavaScript LGPL-3.0 5 14 6 0 Updated May 10, 2021

• cytoscape.js-cise

  An implementation of the circular layout algorithm by Dogrusoz et al. as a Cytoscape.js extension
  JavaScript MIT 6 16 5 0 Updated May 7, 2021

• cytoscape.js-layout-service

  Web-service on cytoscape.js to layout graphs

  nodejs json cytoscape graphml sbgn cose
  JavaScript MIT 2 7 4 0 Updated May 5, 2021

• sbls

  SBLS: Systems Biology Layout Service
  MIT 0 0 0 0 Updated May 3, 2021

• pathway-mapper

  An interactive and collaborative graphical curation tool for cancer pathways

  bioinformatics systems-biology tcga cancer-genomics pathways network-visualization pathway-analysis
  JavaScript AGPL-3.0 21 39 10 0 Updated May 3, 2021

• cytoscape.js-avsdf

  An implementation of the circular layout algorithm by He & Sykora
  JavaScript MIT 4 6 0 1 Updated Apr 29, 2021

• cytoscape.js-layout-utilities

  Miscellaneous utilities for placement of nodes or components complementary to a main layout algorithm
  JavaScript MIT 2 9 3 0 Updated Apr 29, 2021

• layland

  Cytoscape.js-based graph layout and analysis tool
  JavaScript MIT 1 4 1 1 Updated Apr 29, 2021

• cose-base

  Core module for compound spring embedder based layout styles
  JavaScript MIT 0 5 0 0 Updated Apr 29, 2021

• avsdf-base

  A JS implementation of Adjacent Vertex with Smallest Degree First algorithm
  JavaScript MIT 0 0 0 1 Updated Apr 29, 2021

• cytoscape.js-graphml

  A Cytoscape.js extension to import from and export to GraphML format

  network-visualization graph-drawing cytoscapejs cytoscapejs-extension graphml
  JavaScript MIT 9 23 11 1 Updated Apr 29, 2021

• cytoscape.js-context-menus

  A Cytoscape.js extension to provide context menu around elements and core instance

  editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
  JavaScript MIT 37 54 2 2 Updated Apr 29, 2021

• cytoscape.js-node-editing

  A Cytoscape.js extension to provide grapples to resize nodes

  editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
  JavaScript MIT 8 19 1 0 Updated Apr 29, 2021

• cytoscape.js-expand-collapse

  A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs

  network-visualization network-analysis graph-drawing cytoscapejs cytoscapejs-extension complexity-management
  HTML MIT 25 85 18 0 Updated Apr 29, 2021

• cytoscape.js-edge-editing

  A Cytoscape.js extension enabling interactive editing of edge anchor (bend or control) points

  editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
  JavaScript MIT 15 22 6 0 Updated Apr 29, 2021

• sbgnviz.js

  A web based visualization tool for process description maps in SBGN

  bioinformatics systems-biology pathways network-visualization sbgn
  JavaScript LGPL-3.0 11 31 2 0 Updated Apr 22, 2021

• cytoscape.js-fcose

  fCoSE: a fast Compound Spring Embedder
  JavaScript MIT 10 42 5 0 Updated Apr 20, 2021

• cytoscape.js-layvo
  JavaScript MIT 0 2 0 1 Updated Apr 19, 2021

• cytoscape.js-cosep

  Compound Spring Embedder with Ports (CoSEP)
  JavaScript MIT 0 2 2 0 Updated Mar 30, 2021

• layout-base

  Basic layout model and some utilities for some Cytoscape.js layout extensions
  JavaScript MIT 2 3 1 2 Updated Mar 4, 2021

• cytoscape.js-view-utilities

  A Cytoscape.js extension to provide miscellenaous view utilities such as hiding and highlighting nodes/edges

  editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension complexity-management
  HTML MIT 6 34 0 0 Updated Feb 17, 2021

• cytoscape-sbgn-stylesheet

  Forked from PathwayCommons/cytoscape-sbgn-stylesheet

  View biological networks via Cytoscape.js and sbgn-ml
  JavaScript MIT 16 0 0 0 Updated Feb 9, 2021

• cytoscape.js-chola

  Orthogonal layout for graphs with compound nodes
  JavaScript MIT 0 0 0 0 Updated Jan 29, 2021

• cytoscape.js

  Forked from cytoscape/cytoscape.js

  Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, Bower, jspm, Meteor/Atmosphere, jQuery, and plain JS/JavaScript)
  JavaScript MIT 1,385 2 0 0 Updated Oct 20, 2020

• cytoscape.js-grid-guide

  A Cytsocape.js extension to provide a framework for grid interactions such as grid lines and snapping to grid, and guidelines and snap support for alignment of nodes.

  grid network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming alignment-guidelines
  JavaScript MIT 5 40 6 0 Updated Jul 2, 2020

• cytoscape.js-autopan-on-drag

  A Cytsocape.js extension to automatically pan when nodes are out of canvas bounds

  editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
  JavaScript MIT 4 10 2 0 Updated Mar 30, 2020

• cytoscape.js-undo-redo

  A Cytoscape.js extension to provide an undo-redo framework

  editor undo-redo network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
  JavaScript MIT 5 36 2 1 Updated Mar 29, 2020

• chilay

  Chisio Layout (ChiLay) provides a graph layout framework along with a number of layout algorithms implemented in Java. Layout services can be used locally or remotely (through HTTP) from a server.
  Java MIT 2 7 7 1 Updated Dec 3, 2019

• cd2sbgnml-webservice Archived

  Forked from royludo/cd2sbgnml-webservice

  An easily deployable small webservice to translate CellDesigner-SBGN-ML files with cd2sbgnml
  Java LGPL-3.0 2 0 0 0 Updated Nov 14, 2019