INFO:    Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred
INFO:    Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
INFO:    fuse: warning: library too old, some operations may not work
WARNING:root:Transcript WildtypeProtein sequence contains internal stop codon. These can occur in Ensembl transcripts of the biotype polymorphic_pseudogene. Skipping.
chr10 27414180 G A ENST00000642324.1
WARNING:root:Transcript WildtypeProtein sequence contains internal stop codon. These can occur in Ensembl transcripts of the biotype polymorphic_pseudogene. Skipping.
chr12 40481657 G A ENST00000454784.10
WARNING:root:Transcript WildtypeProtein sequence contains internal stop codon. These can occur in Ensembl transcripts of the biotype polymorphic_pseudogene. Skipping.
chr12 40482578 C T ENST00000454784.10
WARNING:root:Transcript WildtypeProtein sequence contains internal stop codon. These can occur in Ensembl transcripts of the biotype polymorphic_pseudogene. Skipping.
chr12 40487203 G A ENST00000454784.10
WARNING:root:Transcript WildtypeProtein sequence contains internal stop codon. These can occur in Ensembl transcripts of the biotype polymorphic_pseudogene. Skipping.
chr10 27414180 G A ENST00000642324.1
WARNING:root:Transcript WildtypeProtein sequence contains internal stop codon. These can occur in Ensembl transcripts of the biotype polymorphic_pseudogene. Skipping.
chr12 40481657 G A ENST00000454784.10
WARNING:root:Transcript WildtypeProtein sequence contains internal stop codon. These can occur in Ensembl transcripts of the biotype polymorphic_pseudogene. Skipping.
chr12 40482578 C T ENST00000454784.10
WARNING:root:Transcript WildtypeProtein sequence contains internal stop codon. These can occur in Ensembl transcripts of the biotype polymorphic_pseudogene. Skipping.
chr12 40487203 G A ENST00000454784.10
Traceback (most recent call last):
  File "/opt/conda/bin/pvacseq", line 8, in <module>
    sys.exit(main())
  File "/opt/conda/lib/python3.8/site-packages/pvactools/tools/pvacseq/main.py", line 116, in main
    args[0].func.main(args[1])
  File "/opt/conda/lib/python3.8/site-packages/pvactools/tools/pvacseq/run.py", line 158, in main
    pipeline.execute()
  File "/opt/conda/lib/python3.8/site-packages/pvactools/lib/pipeline.py", line 506, in execute
    PostProcessor(**post_processing_params).execute()
  File "/opt/conda/lib/python3.8/site-packages/pvactools/lib/post_processor.py", line 32, in execute
    self.calculate_manufacturability()
  File "/opt/conda/lib/python3.8/site-packages/pvactools/lib/post_processor.py", line 55, in calculate_manufacturability
    CalculateManufacturability(self.input_file, self.manufacturability_fh.name, self.file_type).execute()
  File "/opt/conda/lib/python3.8/site-packages/pvactools/lib/calculate_manufacturability.py", line 63, in execute
    writer.writerow(line)
  File "/opt/conda/lib/python3.8/csv.py", line 154, in writerow
    return self.writer.writerow(self._dict_to_list(rowdict))
OSError: [Errno 28] No space left on device