From 4e14fffe16dac51835aba7822ea23f7e1288fdc2 Mon Sep 17 00:00:00 2001 From: Chen2x Date: Wed, 24 May 2017 17:17:36 -0400 Subject: [PATCH] checking local validation --- .../workspace/variation.20170119/local_val/analysis.yaml | 5 +---- tests/submission/test_submitter.py | 1 + 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/tests/data/workspace/variation.20170119/local_val/analysis.yaml b/tests/data/workspace/variation.20170119/local_val/analysis.yaml index a9be813..95db18b 100644 --- a/tests/data/workspace/variation.20170119/local_val/analysis.yaml +++ b/tests/data/workspace/variation.20170119/local_val/analysis.yaml @@ -5,10 +5,7 @@ analysis: #analysisDate: "2017-02-09" analysisTypeId: 80 # Sequence variation (VCF) genomeId: 453 # GRCh38 - chromosomeReferences: - - 24 - - 25 - - 26 + chromosomeReferences: [g] experimentTypeId: [700] # whole genome sequencing platform: Illumina HiSeq 2000 sample: diff --git a/tests/submission/test_submitter.py b/tests/submission/test_submitter.py index d2c0970..303ba06 100644 --- a/tests/submission/test_submitter.py +++ b/tests/submission/test_submitter.py @@ -23,6 +23,7 @@ def test_submitter(ctx, mock_server): ctx.obj['SUBMISSION']['sessionToken'] = 'X-Token' ctx.obj['SETTINGS']['icgc_project_code'] = "abjdh" + #ctx.obj['SETTINGS']['ega_study_id'] = "abjdh" ctx.obj['SUBMISSION']['id'] = "55" #fix the put fixture