@idekerlab

UC, San Diego Trey Ideker Lab

Software projects developed by UCSD Trey Ideker Lab.

JavaScript 1 0

web.cytoscape

New version of cyNetShare

Updated Jul 30, 2016

Python 23 8

py2cytoscape

Python utilities for Cytoscape and Cytoscape.js

Updated Jul 20, 2016

cyREST

RESTful API Module for Cytoscape 3.2.1+

Updated Jul 12, 2016

JavaScript 1 1

ndex-valet-electron

NDEx Valet Electron app

Updated Jul 5, 2016

cy-rest-R

Example R script to use Cytoscape via RESTful API module.

Updated Jul 5, 2016

Java 0 0

ndex-valet

Updated Jul 4, 2016

Java 5 8

KEGGscape

forked from kozo2/kgmlreader

A Cytoscape app for importing KGML(KEGG pathway XML)

Updated Jul 2, 2016

Java 2 2

jActiveModules

Updated Jun 16, 2016

Java 0 0

table-import-idmapping-impl

A preliminary table-import-impl which allows id mapping

Updated Jun 10, 2016

JavaScript 0 0

atgo

Updated Jun 9, 2016

Jupyter Notebook 2 6

tsri-lecture

Course material for TSRI network biology lecture

Updated May 19, 2016

Java 1 0

science-direct-app

Updated Apr 28, 2016

Java 0 0

nbs-ilab

Java code for running a NBS web-server

Updated Apr 15, 2016

Java 1 1

dot-app

Cytoscape application for exporting to .dot file format

Updated Feb 24, 2016

ontology-app

Updated Feb 23, 2016

JavaScript 5 5

cy-net-share

A simple web application to share network files generated with Cytoscape.

Updated Jan 27, 2016

Python 3 1

cxio_python

Updated Jan 1, 2016

Python 2 4

ci-service-template

Template code to create new Cytoscape CI services.

Updated Dec 3, 2015

Java 0 1

genomespace-cytoscape-weblaunch

GenomeSpace Cytoscape Weblaunch

Updated Sep 16, 2015

Python 0 0

nexo2

Portable version of NeXO running on Docker containers

Updated Sep 10, 2015