Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
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pyNBS

This is a python package replicating the network-based stratification algorithm used in the Nature Methods Hofree et al 2013 paper. This Python code repository is ported from NBS Matlab 0.2.0. The companion Application Note for this repository is available online now at Oxford Bioinformatics.

Installing NBS

For information on the required dependencies of pyNBS, and how to install and run pyNBS, please see our "Installing pyNBS page" for more details.

Issues

Please feel free to post issues/bug reports. Questions can be sent to jkh013@ucsd.edu