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README.md

CAFA4 Format Checker

This repository contains Python scripts for checking the format of prediction files for CAFA4

For more information on CAFA see: http://biofunctionprediction.org Specifically, for the CAFA rules see: https://www.biofunctionprediction.org/cafa-targets/CAFA4_rules%20_01_2020_v4.pdf

Running

New for any prediction file:

./cafa4_format_checker.py filename

Where "filename" is the path to the prediction file or zipped archive

This checks any type of prediction file. CAFA4 format checker will first check that the filename is correctly formatted. Based on the filename structure, the program will run cafa_go_format_checker, cafa_do_format_checker, or cafa_hpo_format_checker.

Authored by Iddo Friedberg, Tim Bergquist and Scott Zarecor. Distributed under GPLv3 license (attached)

Contact: idoerg@gmail.com

Contact: trberg@uw.edu

Contact: szarecor@iastate.edu

Important: If you are participating in CAFA4, you should subscribe to the afp-cafa mailing list: https://mailman.iastate.edu/mailman/listinfo/afpcafa

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Format checkers for CAFA predictions files

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