diff --git a/segments/annot-annovar.sh b/segments/annot-annovar.sh index e35f99c..e56bb21 100755 --- a/segments/annot-annovar.sh +++ b/segments/annot-annovar.sh @@ -136,7 +136,7 @@ if [[ "$genome_build" == "hg19" ]] ; then annovar_argument="'--splicing_threshold 10',,,,,,,," annovar_cols_grep="^Ref|^Alt|refGene|avsnp|AF_popmax|cancer_AF|controls_AF|Kaviar_AF|cosmic|InterVar|CADD13_PHRED|FATHMM" elif [[ "$genome_build" == "hg38" ]] ; then - annovar_protocol="refGene,avsnp150,gnomad_exome,gnomad_genome,kaviar_20150923,cosmic90,intervar_20180118,clinvar_20210123,revel,dbnsfp33a" + annovar_protocol="refGene,avsnp150,gnomad_exome,gnomad_genome,kaviar_20150923,cosmic94,intervar_20180118,clinvar_20210501,revel,dbnsfp33a" annovar_operation="g,f,f,f,f,f,f,f,f,f" annovar_argument="'--splicing_threshold 10',,,,,,,,," annovar_cols_grep="^Ref|^Alt|refGene|avsnp|gnomAD_exome_ALL|gnomAD_genome_ALL|Kaviar_AF|cosmic|InterVar|CLNSIG|REVEL|CADD|fathmm"