From 940b43795e72e55bb0421be51ee54d74cd9d3adc Mon Sep 17 00:00:00 2001
From: igor <6363505+igordot@users.noreply.github.com>
Date: Fri, 2 Jul 2021 09:48:45 -0400
Subject: [PATCH] update annot-annovar databases

---
 segments/annot-annovar.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/segments/annot-annovar.sh b/segments/annot-annovar.sh
index e35f99c..e56bb21 100755
--- a/segments/annot-annovar.sh
+++ b/segments/annot-annovar.sh
@@ -136,7 +136,7 @@ if [[ "$genome_build" == "hg19" ]] ; then
 	annovar_argument="'--splicing_threshold 10',,,,,,,,"
 	annovar_cols_grep="^Ref|^Alt|refGene|avsnp|AF_popmax|cancer_AF|controls_AF|Kaviar_AF|cosmic|InterVar|CADD13_PHRED|FATHMM"
 elif [[ "$genome_build" == "hg38" ]] ; then
-	annovar_protocol="refGene,avsnp150,gnomad_exome,gnomad_genome,kaviar_20150923,cosmic90,intervar_20180118,clinvar_20210123,revel,dbnsfp33a"
+	annovar_protocol="refGene,avsnp150,gnomad_exome,gnomad_genome,kaviar_20150923,cosmic94,intervar_20180118,clinvar_20210501,revel,dbnsfp33a"
 	annovar_operation="g,f,f,f,f,f,f,f,f,f"
 	annovar_argument="'--splicing_threshold 10',,,,,,,,,"
 	annovar_cols_grep="^Ref|^Alt|refGene|avsnp|gnomAD_exome_ALL|gnomAD_genome_ALL|Kaviar_AF|cosmic|InterVar|CLNSIG|REVEL|CADD|fathmm"