From d6ba30de9895d572d94b28800f3bd3fc3b128c2d Mon Sep 17 00:00:00 2001
From: Serafim Nenarokov <serafim.nenarokov@flant.com>
Date: Fri, 17 Nov 2017 14:47:09 +0100
Subject: [PATCH] Adds genome coordinates output in ruler mode

---
 src/org/broad/igv/ui/IGV.java                      | 3 +++
 src/org/broad/igv/ui/panel/DataPanelContainer.java | 6 ++++++
 2 files changed, 9 insertions(+)

diff --git a/src/org/broad/igv/ui/IGV.java b/src/org/broad/igv/ui/IGV.java
index 6f03eb2699..3ebc905c09 100644
--- a/src/org/broad/igv/ui/IGV.java
+++ b/src/org/broad/igv/ui/IGV.java
@@ -2073,6 +2073,9 @@ public Future startUp(Main.IGVArgs igvArgs) {
     }
 
     public void setRulerEnabled(boolean rulerEnabled) {
+        if (!rulerEnabled){
+            setStatusBarMessage3("");
+        }
         this.rulerEnabled = rulerEnabled;
     }
 
diff --git a/src/org/broad/igv/ui/panel/DataPanelContainer.java b/src/org/broad/igv/ui/panel/DataPanelContainer.java
index c50070693d..f53c95f0b4 100644
--- a/src/org/broad/igv/ui/panel/DataPanelContainer.java
+++ b/src/org/broad/igv/ui/panel/DataPanelContainer.java
@@ -148,6 +148,12 @@ protected void paintChildren(Graphics g) {
             int start = MouseInfo.getPointerInfo().getLocation().x - getLocationOnScreen().x;
             g.setColor(Color.BLACK);
             g.drawLine(start, 0, start, getHeight());
+
+            if (!FrameManager.isGeneListMode()) {
+                ReferenceFrame frame = FrameManager.getDefaultFrame();
+                int pos = (int) frame.getChromosomePosition(start) + 1;
+                IGV.getInstance().setStatusBarMessage3(" " + Integer.toString(pos));
+            }
         }
     }